Spokes 1 : Research References    (Table of Contents)
Common knowledge for Spokes obtained from various encyclopedias and dictionaries, including Encyclopedia Britannica, Everipedia, New World Encyclopedia, Wikipedia, World Book Encyclopedia, Merriam-Webster's Dictionary, Oxford Dictionary,, and a plethora of Internet sites. (General information found on the Internet is cross-referenced for veracity.)

The Universe
John Gribbin, Before the Big Bang, Amazon Kindle (2015). Roger Penrose, The Road to Reality: A Complete Guide to the Laws of the Universe, Vintage Books (2004). AFP, "Universe has two trillion more galaxies than previously thought," The Guardian (13 October 2016).
Christopher J. Conselice et al, "The evolution of galaxy number density at z < 8 and its implications," The Astrophysical Journal, (14 October 2016).
Henry Fountain, "Two trillion galaxies, at the very least," The New York Times (17 October 2016).
Ron Cowen, "Billions, billions and more billions," Science News 179(1): 10 (1 January 2011).
J.R. Gott III et al, "A map of the universe," Astrophysical Journal 624 (2): 463–484 (2005).
Antonio Lamua (editor), Secrets of Infinity, Firefly (2013).
The Big Bang
Charles H. Lineweaver and Tamara M. Davis, "Misconceptions about the Big Bang," Scientific American 292(3): 36–45 (March 2005).
Lisa Grossman, "Medieval multiverse heralded modern cosmic conundrums," New Scientist (13 March 2014).
Cormac O Raifeartaigh et al, "A steady-state model of the universe by Albert Einstein," arXiv:1402.0132 (26 February 2014).
Davide Castelvecchi, "Einstein's lost theory uncovered," Nature (24 February 2014).
Georges Lemaître, "The beginning of the world from the point of view of quantum theory," Nature 127: 706 (9 May 1931).
Mark Peplow, "Planck snaps infant universe," Nature 495: 417–418 (28 March 2013).
Andrew Grant, "Universe is a teeny bit older than thought," Science News (21 March 2013).
Tom Siegfried, "Cosmic questions, answers pending," Science News 179(9): 20–21 (23 April 2011).
Ron Cowen, "New study gives dark energy a boost," Science News (16 March 2011).
Glenn G. Kacprzak, "The pristine universe," Science 334 (6060): 1216–1217 (2 December 2011).
"Revamping the size of the universe," Science News (15 May 2014).
Ivan Agullo et al, "Quantum gravity extension of the inflationary scenario," Physical Review Letters 109(25): 1301–1306 (17 December 2012).
Michael S. Turner, "Cosmology: a story of cosmic proportions," Nature 526: 40–41 (01 October 2015).
Cosmic Inflation
Adrian Cho, "Universe's high-def baby picture confirms standard theory," Science 339: 1513 (29 March 2013).
Alan H. Guth, "The inflationary universe: a possible solution to the horizon and flatness problems," Physical Review D 23: 347 (1981).
Alan Guth, The Inflationary Universe, Basic Books (1998).
Paul Steinhardt, "Big Bang blunder bursts the multiverse bubble," Nature (3 June 2014).
Paul J. Steinhardt, "The inflation debate," Scientific American 36–43 (April 2011).
Brian Clegg, Before The Big Bang, St. Martin's Press (2009).
Amanda Gefter, "Infinity's end: time to ditch the never-ending story?," New Scientist 2930 (15 August 2013).
Maggie McKee, "Big bang, no boom: did Plank pop inflation's bubble?," New Scientist (7 October 2013).
Alexandra Witze, "Inflation on trial," Science News 182 (2): 20–21 (28 July 2012).
"Bicep2 2014 I: detection of ß-mode polarization at degree angular scales," arXiv:submit/0934323 (17 March 2014).
Adrian Cho & Yudhijit Bhattacharjee, "First wrinkles in spacetime confirm cosmic inflation," Science 343(6177): 1296–1297 (21 March 2014).
Raphael Flauger et al, "Toward an understanding of foreground emission in the BICEP2 region," arXiv:1405.7351 (28 May 2014).
"BICEP unflexed," The Economist (7 February 2015).
Michael J. Mortonson & Uroš Seljak, "A joint analysis of Planck and BICEP2 B modes including dust polarization uncertainty," arXiv:1405.5857 (22 May 2014).
Ron Cowen, "No evidence for or against gravitational waves," Nature (29 May 2014).
Maggie McKee, "Cosmic inflation's 'smoking gun' goes up in smoke," New Scientist (7 February 2015).
Adrian Cho, "Blockbuster claim could collapse in a cloud of dust," Science 344(6186): 790 (23 May 2014).
Adrian Cho, "Evidence for cosmic inflation wanes," Science 345(6204): 1547 (26 September 2014).
"First direct evidence of cosmic inflation," ScienceDaily (17 March 2014).
Michael Slezak, "Cosmic inflation is dead, long live cosmic inflation!," New Scientist (30 September 2014).
Ron Cowen, "Big Bang finding challenged," Nature (3 June 2014).
Ron Cowen, "Universe may be curved, not flat," Nature (20 September 2013).
Andrew R. Liddle & Marina Cortês, "Cosmic microwave background anomalies in an open universe," Physical Review Letters 111: 111302–111306 (9 September 2013).
Glenn D. Starkman & Dominik J. Schwarz, "Is the universe out of tune?," Scientific American 293(2): 49–55 (August 2005).
Martin Bojowald, "Follow the bouncing universe," Scientific American 299(4): 44–51 (October 2008).
Michael S. Turner, "Origin of the universe," Scientific American 301(3): 36–43 (September 2009).
Cyclic Cosmology
Paul J. Steinhardt & Neil Turok, Endless Universe, Doubleday (2007).
Ahmed Farag Ali & Saurya Das, "Cosmology from quantum potential," arXiv:1404.3093 [gr-qc] (29 December 2014).
"No Big Bang? Quantum equation predicts universe has no beginning," (9 February 2015).
BingKan Xue et al, "Nonperturbative analysis of the evolution of cosmological perturbations through a nonsingular bounce," Physical Review Letters D 88: 083509 (10 October 2013).
Paul J. Steinhardt, "The endless universe: brief introduction to the cyclic universe," Princeton University (7 November 2001).
George F.R. Ellis, "Does the multiverse really exist?," Scientific American 305(2): 38–43 (August 2011).
Lauris Baum & Paul H. Frampton, "Turnaround in cyclic cosmology," Physical Review Letters 98(7): 071301 (16 February 2007).
Stuart Clark, "Embrace the lumpiverse: how mess kills dark energy," New Scientist (25 June 2014).
"Better to see the beautiful, ugly truth of the cosmos," New Scientist (26 June 2014).
Luke McKinney, "The "great wall" of space: galactic superclusters a billion light years away extend for 5% of observable universe," The Daily Galaxy (28 August 2009).
R. Gavazzi et al, "Mass and light in the supercluster of galaxies MS0302+17," Astronomy & Astrophysics 422(2): 407–422 (1 August 2004).
A.J. Connolly et al, "Superclustering at Redshift Z=0.54," arXiv:astro-ph/9610047 (7 October 1996).
Ichi Tanaka et al, "Superclustering of Faint Galaxies in the Field of a QSO Concentration at z~1.1," arXiv:astro-ph/0009229 (14 September 2000).
Fumiaki Nakata et al, "Discovery of a large-scale clumpy structure around the Lynx supercluster at z ? 1.27," Proceedings of the International Astronomical Union 2004(195): 29–33 (March 2004).
Takashi Hasegawa et al, "Large-scale structure of galaxies in the Ophiuchus region," Monthly Notices of the Royal Astronomical Society 316 (2): 326–344 (2000).
Hannah Devlin, "Astronomers discover largest known structure in the universe is ... a big hole," The Guardian (20 April 2015).
István Szapudi et al, "Detection of a supervoid aligned with the cold spot of the cosmic microwave background," Monthly Notices of the Royal Astronomical Society 450 (1): 288–294 (11 June 2015).
Emily Conover, "Debate persists on cosmic expansion," Science News (6 August 2016).
Cosmic Matter
Joseph Silk, "Cosmic conundrums," New Scientist 221(2959): 26–27 (8 March 2014).
Michele Fumagalli et al, "Detection of pristine gas two billion years after the Big Bang," Science (10 November 2011).
Michael D. Lemonick, "The first stars in the universe," Scientific American (18 March 2014).
Voker Bromm, Embers of the distant past," Science 338: 1160–1661 (30 November 2012).
Edwin Cartlidge, "What reionized the universe?," Science 336(6085): 1095–1096 (1 June 2012).
Christopher Crockett, "Early universe's overhaul clarified," Science News 186(10): 9 (15 November 2014).
"Planck reveals first stars were born late," Plank ESA (5 February 2015).
"Oldest stars lit up universe later than thought," Nature World News (6 February 2015).
Ron Cowen, "Lighting the universe," Science News 180(3): 26–28 (30 July 2011).
Glenn G. Kacprzak, "The pristine universe," Science 334: 1216–1217 (2 December 2011).
Alexander L. DeSouza & Shantanu Basu, "The luminosity of population iii star clusters," arXiv:1503.02030 [astro-ph.GA] (6 March 2015).
"Baby galaxies grew up quickly," ScienceDaily (16 May 2012).
Omer Blaes, "A universe of disks," Scientific American 291(4): 47–57 (October 2004).
Oleg N. Kirillov & Frank Stefani, "Extending the range of inductionless manetorotational instability," Physical Review Letters 111(6) (7 Au-gust 2013).
Katia Moskvitch, "Forgotten force: the other great cosmic attractor," New Scientist 2942 (7 November 2013).
Norbert Werner et al, "A uniform metal distribution in the intergalac-tic medium of the Perseus cluster of galaxies," Nature 502: 656–658 (31 October 2013).
Yudhijit Bhattacharjee, "Earliest known galaxy formed stars at breakneck pace," Science 342: 411 (25 October 2013).
Aylin Woodward, "Half the atoms inside your body came from across the universe," New Scientist (27 July 2017).
Christopher F. McKee, "Let there be dust," Nature 333: 1227–1228 (2 September 2011).
M. Matsuura et al, "Herschel detects a massive dust reservoir in supernova 1987A," Nature 333: 1258–1261 (2 September 2011).
Dennis Overbye, "Our universe’s very dusty early, early beginnings," The New York Times (8 March 2017).
N. Laporte et al, "Dust in the reionization era: observations of a Z=8.38 gravitationally-lensed galaxy," Astrophysical Journal Letters (March 2017).
Leopoldo et al, "Young galaxy candidates in teh Hubble frontier fields. II. Mac J0416-2403," The Astrophysical Journal 815(1) (2 December 2015).
"NASA finds direct proof of dark matter," NASA (21 August 2006).
Mariska Kriek et al, "A massive, quiescent, population II galaxy at a redshift of 2.1," Nature (7 December 2016).
Ken Croswell, "Galaxy's rapid growth spurt may have spawed 3000 suns per year," New Scientist (7 December 2016).
Dennis Overbye, "Findings on mysterious haze at galaxy's center," The New York Times (31 October 2009).
Martin J. Rees, "The universe at z > 5: When and how did the “dark age” end?," PNAS 95(1): 47–52 (6 January 1998).
"Seven primitive galaxies at the dawn of time," ScienceDaily (12 December 2012).
Yudhijit Bhattacharjee, "Warped light reveals infant galaxy on the brink of the 'cosmic dawn'," Science 337: 1142 (21 September 2012).
Wei Zheng et al, "A magnified young galaxy from about 500 million years after the Big Bang," Nature 489: 406–408 (20 September 2012).
Lisa Grossman, "Milky Way galaxy is even lighter than thought," New Scientist (14 August 2013).
Bomee Lee et al, "CANDELS: The correlation between galaxy morphol-ogy and star formation activity at z ~ 2," The Astrophysical Journal (15 August 2013).
Darach Watson et al, "A dusty, normal galaxy in the epoch of reioniza-tion," European Southern Observatory (4 March 2015).
Caroline M. S. Straatman et al, "A substantial population of massive quiescent galaxies at z ~ 4 from ZFOURGE," The Astrophysical Jour-nal Letters 783(1) (1 March 2014).
Jörg P. Dietrich et al, "A filament of dark matter between two clusters of galaxies," Nature 487: 202–204 (12 July 2012).
Mehmet Alpaslan et al, "Galaxy and mass assembly (GAMA): fine filaments of galaxies detected within voids," Monthly Notices of the Royal Astronomical Society (9 March 2014).
Pieter van Dokkum et al, "A high stellar velocity dispersion and ~100 globular clusters for the ultra-diffuse galaxy Dragonfly 44," The Astrophysical Journal Letters, (25 August 2016).
Christopher Crockett, "Star-starved galaxies fill the cosmos," Science News (29 November 2016).
Shannon Hall, "Ghost galaxy is 99.99 per cent dark matter with almost no stars," New Scientist (25 August 2016).
Christopher Crockett, "Stellar vomiting produces dark galaxies, simulations suggest," Science News (2 December 2016).
Xaq Rzetelny, "Huge population of 'ultra-dark galaxies' discovered," Ars Technica (11 July 2015).
Ann Finkbeiner, "The mystery of the dead galaxies," Science 346(6212): 905–907 (21 November 2014).
"First direct detection sheds light on dark galaxies," ScienceDaily (30 October 2012).
Christopher Crockett, "Some galaxies are short on stars," Science News (186)12: 9 (13 December 2014).
Andrew Fazekas, "Dark galaxies discovered – may be cosmic 'missing links'," National Geographic (13 July 2012).
Pierre Magain et al, "Discovery of a bright quasar without a massive host galaxy," arXiv:astro-ph/0509433 (15 September 2005).
Too Bright
Lisa Grossman, "Strange dark stuff is making the universe too bright," New Scientist (17 July 2014).
Chalres W. Danforth et al, "An HST/COS survey of the low-redshift IGM. I. Survey, methodology, & overall results," arXiv:1402.2655 (11 February 2014).
Black Holes
"UCI celestial census indicates that black holes pervade the universe," University of California, Irvine (7 August 2017).
Joshua Sokol, "Observations hint at a new recipe for giant black holes," Science 355(6321): 13 (13 January 2017).
Benny Trakhtenbrot et al, "An over-massive black hole in a typical star-forming galaxy, 2 billion years after the Big Bang," Science 349(6244): 168–171 (10 July 2015).
"Black hole affecting galactic climate identified," ScienceDaily (5 January 2016).
N. Cappelluti et al, "Cross-correlating cosmic infrared and X-ray background fluctuations: evidence of significant black hole populations among the cib sources," The Astrophysical Journal (6 May 2013).
M. Volonteri, "The formation and evolution of massive black holes," Science 337: 544–547 (3 August 2012).
Marc Sarzi, "How black holes restrain old galaxies," Nature (26 May 2016).
"Black holes could grow as large as 50 billion suns before their food crumbles into stars according to research," ScienceDaily (18 December 2015).
Jens Thomas et al, "A 17-billion-solar-mass black hole in a group galaxy with a diffuse core," Nature (6 April 2016).
Ákos Bodán & Andy D. Goulding, "Connecting dark matter halos with the galaxy center and the supermassive black hole," The Astrophysical Journal (18 February 2015).
Charles Q. Choi, "Dark side of black holes," Scientific American 302(3): 22 (March 2010).
Christopher Crockett, "Black hole born without stellar parent," Science News (6 August 2016).
Jay Strader et al, "Two stellar-mass black holes in the globular cluster M22," Nature 490: 71–73 (4 October 2012).
Ananda Hota et al, "Discovery of a spiral-host episodic radio galaxy," Monthly Notices of the Royal Astronomical Society: Letters (9 August 2011).
Chris Willot, "A monster in the early universe," Nature 474: 583–584 (30 June 2011).
Xue-Bing Wu et al, "An ultraluminous quasar with a twelve-billion-solar-mass black hole at redshift 6.30," Nature (25 February 2015).
Remco C. E. van den Bosch et al, "An over-massive black hole in the compact lenticular galaxy NGC 1277," Nature 491: 729–731 (29 No-vember 2012).
Q.D. Wang et al, "Dissecting X-ray–emitting gas around the center of our galaxy," Science 341(6149): 981–983 (30 August 2013).
F. Tombesi et al, "Wind from the black-hole accretion disk driving a molecular outflow in an active galaxy," Nature 519: 436–438 (26 March 2015).
R. Cowen, "Ray tracing," Science News 172: 291–292 (10 November 2007).
"'Nearby' supermassive black hole rotates at close to the speed of light," The Guardian (27 February 2013).
Christopher Crockett, "Black holes may shut down stellar factories," Science News (5 March 2014).
Timothy M. Heckman & Guinevere Kauffmann, "The coevolution of galaxies and supermassive black holes: a local perspective," Science 333: 182–185 (8 July 2011).
James E. Geach, "The lost galaxies," Scientific American 304(5): 46–53 (May 2011).
M. R. Schreiber, "One good measure," Science 340(6135): 932–933 (24 May 2013).
Robert Antonucci, "Quasars still defy explanation," Nature 495: 165–167 (14 March 2013).
P.B. Hall et al, "Broad absorption line quasars with redshifted troughs: high-velocity infall or rotationally dominated outflows?," Monthly Notices of the Royal Astronomical Society (12 July 2013).
Ron Cowen, "Galaxy bulges in its middle," Science News 175(5): 9 (28 February 2009).
"X-ray pulses create 'molecular black hole,'" ScienceDaily (31 May 2017).
The Horizon Problem
Niayesh Afshordi & Joao Magueijo, "The critical geometry of a thermal big bang," arXiv:1603.03312 [gr-qc] (8 November 2016). Michael Brooks, "Gravity may have chased light in the early universe," New Scientist, (23 November 2016).
Michael Brooks, "13 things that do not make sense," New Scientist, (16 March 2005).
Galaxy Classification
"Fat or flat: Getting galaxies into shape," (27 February 2014).
Elena D'Onghia et al, "Self-perpetuating spiral arms in disk galaxies," The Astrophysical Journal (20 March 2013).
Pieter van Dokkum et al, "A high stellar velocity dispersion and ~100 globular clusters for the ultra-diffuse galaxy Dragonfly 44," The Astrophysical Journal Letters 828(1) (25 August 2016).
Pieter van Dokkum et al, "A high stellar velocity dispersion and ~100 globular clusters for the ultra-diffuse galaxy Dragonfly 44," arXiv:1606.06291 [astro-ph.GA] (20 June 2016).
Jim Shelton, "Scientists discover a 'dark' Milky Way: Massive galaxy consists almost entirely of dark matter," (25 August 2016).
Rachel Feltman, "A new class of galaxy has been discovered, one made almost entirely of dark matter," The Washington Post (25 August 2016).
Françoise Combes, "Ripples in a galactic pond," Scientific American 293(4): 43–49 (October 2005).
"Unveiling the secret of a Virgo dwarf galaxy," European Southern Observatory (3 May 2000).
G. Bertin & C. Lin, Spiral Structure in Galaxies: a Density Wave Theory, MIT Press (1996).
Galaxy Dynamics
"Universe likes to form galaxies similar to the Milky Way," Science-Daily (12 October 2012).
Gail Wilson, "Four new galaxy clusters take researchers further back in time," Imperial College of London (12 February 2014).
"Early galaxies grew massive through collisions," Niels Bohr Institute (29 January 2014).
"Massive galaxies formed early on through collision," Nature World News (30 January 2014).
"Vigorous star birth without galactic collisions: Herschel paints new story of galaxy evolution," ScienceDaily (14 September 2011).
Hua-bai Li & Thomas Henning, "The alignment of molecular cloud magnetic fields with the spiral arms in M33," Nature 479: 499–501 (24 November 2011).
"When galaxies eat galaxies: gravity lenses suggest big collisions make galaxies denser," ScienceDaily (12 October 2012).
Nick Hand et al, "Detection of Galaxy Cluster Motions with the Kinematic Sunyaev-Zel'dovich Effect," arXiv:1203.4219v1 [astro-ph.CO] (19 March 2012).
Adam S. Bolton et al, "The Boss emission-line lens survey. II. investi-gating mass-density profile evolution in the SLACS+BELLS strong gravitational lens sample," The Astrophysical Journal 757(1) (20 September 2012).
C. Papvich et al, "Large molecular gas reservoirs in ancestors of Milky Way-mass galaxies nine billion years ago," Nature Astronomy (19 December 2016). A.S.G. Robotham et al, "Galaxy And Mass Assembly (GAMA): galaxy close pairs, mergers and the future fate of stellar mass," Monthly Notices of the Royal Astronomical Society (18 September 2014).
Interacting galaxies, "Swinburne University Centre for Astrophysics and Supercomputing (2001).
Rodrigo Ibata & Brad Gibson, "The ghosts of galaxies past," Scientific American 296(4): 39–45 (April 2007).
Govert Schilling, "Hydrogen 'bridge' connects two galaxies," Science (12 June 2012).
Jenny E. Greene, "Goldilocks black holes," Scientific American 306(1): 40–47 (January 2012).
"Dwarf galaxy harbors supermassive black hole," ScienceDaily (9 January 2011).
S.A. Farrell et al, "A young massive stellar population around the intermediate mass black hole ESO 243-49 HLX-1," Astrophysical Journal Letters (February 2012).
"Hundreds of rogue black holes may roam the Milky Way, swallowing anything that gets too close," ScienceDaily (29 April 2009).
The Milky Way
Alexandra Witze, "At home in the universe," Science News 181(12): 22– 25 (16 June 2012).
Ann Finkbeiner, "The new Milky Way," Nature 490: 24-27 (4 October 2012).
"A galactic vampire," The Economist (21 February 2015).
"Galactic snack time: stream of stars slowly being ingested by the Milky Way," ScienceDaily (25 October 2012).
Bart P Wakker & Philipp Richter, "Our growing, breathing galaxy," Scientific American 290(1): 38–47 (January 2004).
Renée C. Kraan-Korteweg & Ofer Lahav, "Galaxies behind the Milky Way," Scientific American 279(4): 50–57 (October 1998).
Jenna Iacurci, "Milky Way is much bigger than previously thought," Nature World News (11 March 2015).
Yan Xu et al, "Rings and radial waves in the disk of the Milky Way," The Astrophysical Journal 801(2) (April 2015).
Amina Helmi et al, "A box full of chocolates: The rich structure of the nearby stellar halo revealed by Gaia and RAVE," Astronomy & Astrophysics (February 2017).
"Stars in the halo of the Milky Way often travel in groups," (31 January 2017).
Nadia Drake, "Planets common as stars in galaxy," Science News 12 (25 February 2012).
Ron Cowen, "Milky Way puts on weight," Science News 175(3): 8 (31 January 2009).
William F. Welsh et al, "Transiting circumbinary planets Kepler-34 b and Kepler-35 b," Nature 481: 475–479 (26 January 2012).
"Planet population is plentiful: planets around stars are the rule rather than the exception," ScienceDaily (11 January 2012).
A. Cassan et al, "One or more bound planets per Milky Way star from microlensing observations," Nature 481, 167–169 (12 January 2012).
"Astronomers get closest look yet at Milky Way's mysterious core," National Radio Astronomy Observatory (2 November 2005).
Nicholos Wethington, "The Milky Way's black hole," Universe Today (5 January 2009).
Ron Cowen, "Beast at galaxy's core lacks spin," Science News 179(1): 11 (1 January 2011).
Ron Cowen, "Decade of the monster," Science 339: 1514–1516 (29 March 2013).
R.P. Eatough et al, "A strong magnetic field around the supermassive black hole at the centre of the Galaxy," Nature 501: 391–394 (19 Sep-tember 2013).
"A strong magnetic field around the Milky Way's black hole," (14 August 2013).
S. Mutch et al, "The mid-life crisis of the milky way and M31," The Astrophysical Journal 736: 84 (1 August, 2011).
"Milky Way amidst a 'Council of Giants'," ScienceDaily (11 March 2014).
Marshall L. McCall, "A council of giants," Monthly Notices of the Royal Astronomical Society (10 March 2014).
Anja von der Linden et al, "Weighing the giants – i. weak-lensing masses for 51 massive galaxy clusters: project overview, data analysis methods and cluster images," Monthly Notices of the Royal Astronomical Society (4 February 2010).
Patrick L. Kelly et al, "Weighing the giants – ii. improved calibration of photometry from stellar colours and accurate photometric red-shifts," Monthly Notices of the Royal Astronomical Society (4 February 2010).
Douglas E. Applegate et al, "Weighing the giants – iii. methods and measurements of accurate galaxy cluster weak-lensing masses," Monthly Notices of the Royal Astronomical Society (4 February 2010).
N. Lehner & J.C. Howk, "A reservoir of ionized gas in the galactic halo to sustain star formation in the Milky Way," Science, (25 August 2011).
"Clue to origin of Milky Way gas clouds discovered," ScienceDaily (29 May 2010).
"Bursting 'bubbles' the origin of galactic gas clouds," ScienceDaily (28 May 2010).
"Massive gas cloud speeding toward collision with Milky Way," ScienceDaily (13 January 2008).
Duncan A. Forbes &Terry Bridges, "Accreted versus in situ milky way globular clusters," Monthly Notices of the Royal Astronomical Society (25 January 2010).
Curtis Struck, "Astrophysics: rough times in the galactic countryside," Nature 477: 286–287 (15 September 2011).
John Matson, "Star-crossed: Milky Way's spiral shape may result from a smaller galaxy's impact," Scientific American (11 September 2011).
Leo Blitz, "The dark side of the Milky Way," Scientific American 37–45 (October 2011).
M.E.K. Williams et al, "The wobbly Galaxy: kinematics north and south with RAVE red-clump giants," Monthly Notices of the Royal Astronomical Society (3 October 2013).
Michael Slezak, "Milky Way galaxy is fluttering like a flag," New Scientist (24 October 2013).
Lawrence M. Widrow et al, "Galactoseismology: discovery of vertical waves in the galactic disk," The Astrophysical Journal 750(2) (10 May 2012).
T.M. Dame & P. Thaddeus, "A molecular spiral arm in the far outer galaxy," The Astrophysical Journal Letters (10 June 2011).
Ron Cowen, "Galaxy gets an arm extension," Science News 179(13): 14 (18 June 2011).
Ian Sample, "Milky Way being pushed through space by cosmic dead zone, say scientists," The Guardian (30 January 2017).
Yehuda Hoffman et al, "The dipole repeller," Nature Astronomy (30 January 2017).
Galactic Webs
"It's filamentary: how galaxies evolve in the cosmic web," ScienceDaily (20 November 2014).
B. Darvish et al, "Cosmic web and star formation activity in galaxies at z ~ 1," The Astrophysical Journal (4 November 2014).
Roger G. Clowes et al, "A structure in the early Universe at z ~ 1.3 that exceeds the homogeneity scale of the R-W concordance cosmology," Monthly Notices of the Royal Astronomical Society (11 January 2013).
Javiera Guedes et al, "Forming realistic late-type spirals in a LCDM universe: the Eris simulation," Astrophysical Journal (2011).
Ananda Hota et al, "Discovery of a spiral-host episodic radio galaxy," Monthly Notices of the Royal Astronomical Society: Letters, 2011).
"Cambridge cosmology: galaxies galaxy clusters and large-scale structure," University of Cambridge (undated).
Noam I. Libeskind & R. Brent Tully, "Our place in the cosmos," Scientific American (July 2017).
R. Brent Tully et al, "The Laniakea supercluster of galaxies," Nature 513: 71–73 (4 September 2014).
Ollie Gillman, "Pathways between Milky Way and 100,000 other galaxies mapped," Daily Mail (14 March 2015).
Cosmological Principle
Roger G. Clowes et al, "A structure in the early Universe at z ~ 1.3 that exceeds the homogeneity scale of the R-W concordance cosmology," Monthly Notices of the Royal Astronomical Society (11 January 2013).
Nate Bastian, "Astrophysics: stars throw their weight in old galaxies," Nature 848: 462–463 (25 April 2012).
"Elisabetta Caffau et al, "An extremely primitive star in the Galactic halo," Nature 477: 67–69 (1 September 2011).
"The star that should not exist," ScienceDaily (1 September 2011).
Michael Marks et al, "Evidence for top-heavy stellar initial mass functions with increasing density and decreasing metallicity," arXiv:1202.4755 (21 February 2012).
Michele Cappellari et al, "Systematic variation of the stellar initial mass function in early-type galaxies," Nature 484: 485–488 (25 April 2012).
Michael Marks & Pavel Kroupa, "Dynamical population synthesis: constructing the stellar single and binary contents of galactic field populations," arXiv:1109.2896 (13 September 2011).
"Galactic clouds swathed in fog," Nature 504: 334 (19/26 December 2013).
"Planet 'reared' by four parent stars," ScienceDaily (4 March 2015).
Robert Braun et al, "Molecular gas in intermediate-redshift ultralu-minous infrared galaxies," Monthly Notices of the Royal Astronomical Society (1 October 2011).
"Galaxies are running out of gas: why the lights are going out in the universe," ScienceDaily (22 August 2011).
Ramin Skibba, "Ageing Milky Way stopped making stars before it ran out of gas," New Scientist (2 March 2016).
E. Valenti et al, "Stellar density profile and mass of the Milky Way bulge from VVV data," Astronomy & Astrophysics (1 March 2016).
Alexandra Witze, "A new phase for hydrogen found," Science News 13 (7 April 2012).
Zeeya Merali, "Stars draw atoms closer together," Nature (19 July 2012).
Nadia Drake, "For white dwarfs, Earth for dinner," Science News 180(7): 10 (24 September 2011).
Yudhijit Bhattacharjee, "How do stars explode?," Science 336(6085): 1094–1095 (1 June 2012).
Massive Stars
H. Sana et al, "Binary interaction dominates the evolution of massive stars," Science 337(6093): 444–446 (27 July 2012).
"Brightest stars don't live alone: most stellar heavyweights come in interacting pairs, VLT finds," ScienceDaily (26 July 2012).
John F. Cherry et al, "Neutrino scattering and flavor transformation in supernovae," Physical Review Letters 108(26): 261104–261109 (26 June 2012).
Neutron & Quark Stars
P. Kaaret et al, "Evidence of 1122 Hz X-ray burst oscillations from the neutron star X-ray transient XTE J1739-285," The Astrophysical Journal, 657: L97–L100 (10 March 2007).
Edward Witten, "Cosmic separation of phases," Physical Review D 30(2): 272–285 (15 July 1984).
"Double blasts may have birthed exotic quark stars", New Scientist (31 August 2013).
Rachid Ouyed et al, "SN 2009ip and SN 2010mc as dual-shock quark-novae," arXiv (14 September 2013).
Anil Ananthaswamy, "Quark stars: how can a supernova explode twice?," New Scientist (9 December 2013).
Avishay Gal-Yam, "Super supernovae," Scientific American 45–49 (June 2012).
Michael Moyer, "The biggest bang theory," Scientific American 303(4): 18 (October 2010).
Jonathan C. Tan, "A dark cloud unveils its secrets," Nature 500: 537–538 (29 August 2013).
Lisa Grossman, "Solar system birthed Jupiter early on," Science News (8 July 2017).
Nadia Drake, "Planet search finds lots of little guys," Science News (13 September 2011).
Simon Casassus et al, "Flows of gas through a protoplanetary gap," Nature 493: 191–194 (10 January 2013).
David R. Ardila, "The hidden members of planetary systems," Scientific American 290(4): 61–69 (April 2004).
"Star dines on young planet," Nature (9 August 2012).
Lars A. Buchhave et al, "An abundance of small exoplanets around stars with a wide range of metallicities," Nature 486: 375–377 (12 June 2012).
Christopher Crockett, "Overweight planet shake up theory," Science News (12 July 2014).
James F. Kasting & Chester E. Harman, "Inner edge of the habitable zone," Nature 504: 221–222 (12 December 2013).
Ravi Kumar Kopparapu, "A revised estimate of the occurrence rate of terrestrial planets in the habitable zones around kepler m-dwarfs," arXiv:1303.2649 (11 March 2013).
"In praise of moons," The Economist (10 November 2012).
"Planets can form around different types of stars," ScienceDaily (13 June 2012).
Starless Planets
G.F. Gahm et al, "Mass and motion of globulettes in the Rosette Nebula," Astronomy & Astrophysics (1 July 2013).
"Free-floating planets may be born free," ScienceDaily (20 August 2013).
The Solar System
"Fingering the culprit that polluted the solar system," ScienceDaily (2 August 2012).
"Home away from home," The Economist (10 December 2011).
Ann Finkbeiner, "Planets in chaos," Nature 511: 22–25 (3 July 2014).
W. Benz et al, "Planet population synthesis," arXiv:1402.7086 [astro-ph.EP] (11 March 2014).
Dennis Danielson & Christopher M. Graney, "The case against Copernicus," Scientific American 310(1): 72–77 (January 2014).
Solar System History
"Our solar system is not quite as special as once believed, new research suggests," ScienceDaily (2 November 2012).
Silvia Garbari et al, "A new determination of the local dark matter density from the kinematics of K dwarfs," Monthly Notice of the Royal Astronomical Society (9 August 2012).
The Sun
J.R. Kuhn et al, "The precise solar shape and its variability," Sciencexpress (16 August 2012).
Douglas Gough, "How oblate is the Sun?," Science 337: 1611–1612 (28 September 2012).
E. Fossat et al, "Evidence for a rapid rotation of the solar core," Astronomy & Astrophysics (August 2017).
Stuart Wolpert, "Sun's core rotates four times faster than its surface," (1 August 2017).
Simon F. Portegies Zwart, "The long-lost siblings of the Sun," Scientific American 301(5): 41–47 (November 2009).
Maria Lugaro et al, "Stellar origin of the 182Hf cosmochronometer and the presolar history of solar system matter," Science 345(6197): 650–653 (8 August 2014).
C. Papovich et al, "Zfourge/Candels: on the evolution of M* galaxy progenitors from Z = 3 to 0.5*," The Astrophysical Journal 803(1) (2015).
Peter F. Wyper et al, "A universal model for solar eruptions," Nature (26 April 2017). "Sun's eruptions might all have same trigger," (26 April 2017).
"Tilted suns," (4 November 2013).
Richard A. Kerr, "Why is the Sun's corona so hot?," Science 336(6085): 1099 (1 June 2012).
David H. Hathaway et al, "Giant convection cells found on the Sun," Science 342(6163): 1217–1219 (6 December 2013).
Jeffrey W. Brosius et al, "Pervasive faint fe XIX emission from a solar active region observed with eunis-13: evidence for nanoflare heating," The Astrophysical Journal (1 August 2014).
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Stephen J. Bradshaw, "Solar physics: swirls in the corona," Nature 486: 476–477 (28 June 2012).
Sven Wedemeyer-Böhm et al, "Magnetic tornadoes as energy channels into the solar corona," Nature 486: 505–508 (28 June 2012).
"How to predict and prepare for space weather," The Economist (25 February 2017).
Ron Cowen, "Solar conundrum may be cracked," Science News 179(3): 12 (29 January 2011).
Rebecca Boyle, "Strangest star: 6 things we didn't know about the sun," New Scientist (18 September 2014).
P. Cargill et al, "Solar physics: waves galore," Nature 475: 463–464, (28 July 2011).
Nadia Drake, "Sun's shock wave goes missing," Science News 181(12): 17 (16 June 2012).
Ron Cowen, "Solar system's edge surprises astronomers," Science News (15 October 2009).
D.J. McComas et al, "The heliosphere's interstellar interaction: no bow shock," Science (10 May 2012).
Richard A. Kerr, "Magnetic tornadoes rage on the Sun," Science (27 June 2012).
Michael R. Rampino, "Disc dark matter in the Galaxy and potential cycles of extraterrestrial impacts, mass extinctions and geological events," Monthly Notices of the Royal Astronomical Society (18 Febru-ary 2015).
"Does dark matter cause mass extinctions and geologic upheavals?," New York University (19 February 2015).
Bruce Balick & Adam Frank, "The extraordinary deaths of ordinary stars," Scientific American 291(1): 50–59 (May 2008).
The Planets
Douglas N.C. Lin, "The genesis of planets," Scientific American 298(5): 50–59 (May 2008).
Konstantin Batygin & Greg Laughlin, "Jupiter’s decisive role in the inner Solar System’s early evolution," PNAS (23 March 2015).
Tim Elliott, "Speed metal," Science 344(6188): 1086–1087 (6 June 2014).
T.S. Kruijer ea al, "Protracted core formation and rapid accretion of protoplanets," Science 344(6188): 1150–1154 (6 June 2014).
Richard A. Kerr, "Why is the solar system so bizarre?," Science 336 (6085): 1098 (1 June 2012).
Alexandra Witze, "Mercury shrinking more than thought," Nature News (9 December 2013).
Jacob Aron, "Volcanic blasts hint that Mercury is a migrant planet," New Scientist (7 April 2014).
Maggie McKee, "Stores of ice confirmed on Sun-scorched Mercury," Nature News (29 November 2012).
Paul G. Lucey, "A wet and volatile Mercury," Science 339(6117): 282-283 (18 January 2013).
David J. Lawrence et al, " Evidence for water ice near Mercury's north pole from Messenger neutron spectrometer measurements," Science (29 November 2012).
Alexandra Witze, "Dust reveals ancient origin for Saturn's rings," Nature (19 August 2014).
Martin A. Slade et al, "Mercury radar imaging: evidence for polar ice," Science 258(5082): 635–640 (23 October 1992).
Stuart Clark, "Nasa's Messenger finds water ice and organic mole-cules on Mercury," The Guardian (1 December 2012).
Alan Brandon, "Planetary science: building a planet in record time," Nature 473: 460–461 (26 May 2011).
N. Dauphas & A. Pourmand, "Hf–W–Th evidence for rapid growth of Mars and its status as a planetary embryo," Nature 473: 489–492 (26 May 2011).
"Impact theory gets whacked," Science 342: 183–184 (11 October 2013).
Robert Irion, "It all began in chaos," National Geographic (July 2103).
R. Gomes et al, "Origin of the cataclysmic Late Heavy Bombardment period of the terrestrial planets," Nature 435: 466–469 (26 May 2005).
Richard A. Kerr, "The young solar system took a one-two punch?," Science 336 (6078): 151 (13 April 2012).
"Migrating planets sped up collisions," Nature 495: 413 (28 March 2013).
Nadia Drake, "Probe visits a planetary also-ran," Science News 181(12): 14 (3 December 2011).
Robin M. Canup, "Origin of Saturn's rings and inner moons by mass removal from a lost Titan-sized satellite," Nature 468: 943–926 (16 December 2010).
Ron Cowen, "Demise of a moon, rise of the rings," Science News 179(1): 10 (1 January 2011).
A. Morbidelli et al, "Chaotic capture of Jupiter's Trojan asteroids in the early solar system," Nature 435: 462–465 (26 May 2005).
Alexandra Witze, "Elements under pressure reveal secrets of extreme chemistry," Science News 181: 26–29 (14 January 2012).
Ken Croswell, "Is Jupiter eating its own heart?," Science (16 December 2011).
Ron Cowen, "The solar system's big bang," Science News 175(4): 26–29 (14 February 2009).
Steven Soter, "What is a planet?," Scientific American 296(1): 34–41 (January 2007).
Christopher Crockett, "A distant planet may lurk far beyond Neptune," Science News (14 November 2014).
Leah Crane, "Titan could host building blocks of alien cells," New Scientist (5 August 2017).
Maggie McKee, "Caught in the act," Nature 493: 592–596 (31 January 2013).
"Giant impact scenario may explain the unusual moons of Saturn," ScienceDaily (17 October 2012).
Ralph Lorenz & Christophe Sotin, "Moon that would be a planet," Scientific American 302(3): 36–43 (March 2010).
"Ice cloud heralds fall at Titan's south pole," ScienceDaily (11 April 2013).
"Saturn's moon Titan shows surprising seasonal changes," ScienceDai-ly (28 September 2012).
"Saturn's moon Titan: Cassini finds Titan's clouds hang on to summer," ScienceDaily (3 June 2009).
Jonathan Amos, "Titan moon's colossal methane seas," BBC News (12 December 2013).
Caitlin A. Griffith et al, "Possible tropical lakes on Titan from observations of dark terrain," Nature 486: 237–239 (14 June 2012).
"Lakes on Saturn's moon Titan filled with liquid hydrocarbons like ethane and methane, not water," ScienceDaily (21 September 2010).
Benjamin A. Black et al, "Estimating erosional exhumation on Titan from drainage network morphology," Journal of Geophysical Research (15 August 2012).
Luciano Iess et al, "The tides of Titan," Science 337: 457–459 (27 July 2012).
"Cassini finds likely subsurface ocean on Saturn's moon Titan," ScienceDaily (28 June 2012).
Giuseppe Mitri et al, "Shape, topography, gravity anomalies and tidal deformation of Titan," Icarus 236: 169–177 (1 July 2014).
D. Hemingway et al, "A rigid and weathered ice shell on Titan," Nature 500: 550–552 (29 August 2013).
Richard A. Kerr, "Taking the life out of Titan," Science 341: 949-950 (30 August 2013).
Ron Cowen, "Titan may host prebiotic brew," ScienceDaily (5 August 2009).
Ron Cowen, "Titan chemistry yields hint of life," Science News 178(1): 10 (3 July 2010).
Andrew Clarke, "Evolution and low temperatures," in Evolution on Planet Earth, Academic Press (2003).
K. Retherford, "Jupiter moon Europa may have water geysers taller than Everest," CBS News (12 December 2013).
Christopher Crockett, "Subsurface sea hides below ice of Saturn moon," Science News (3 April 2014).
Margaret G. Kivelson et al, "Galileo magnetometer measurements: a stronger case for a subsurface ocean at Europa," Science 289(5483): 1340–1343 (25 August 2000).
David Stevenson, " Europa's ocean – the case strengthens," Science 289(5483): 1305–1307 (25 August 2000).
Alan Yuhas, "Jupiter's moon Europa may expel water plumes from under icy shell, Nasa says," The Guardian (26 September 2016).
Rachel Feltman, "NASA just saw Europa’s geysers erupting into space. Again.," The Washington Post (26 September 2016) Amina Khan, "Water geysers erupt on Europa! Could Jupiter's icy moon host life?," Los Angeles Times (12 December 2013).
Lisa Gorssman, "First water plume seen firing from Jupiter moon Europa," New Scientist (12 December 2013).
Simon A. Kattenhorn & Louise M. Prockter, "Evidence for subduction in the ice shell of Europa," Nature Geoscience (7 September 2014).
Alexandra Witze, "Plate tectonics found on Europa," Nature (7 September 2014).
Nicola Guttridge, "Astrophile: Europa's choppy ocean looks friendly to life," New Scientist (1 December 2013).
K.M. Soderlund et al, "Ocean-driven heating of Europa's icy shell at low latitudes," Nature Geoscience (1 December 2013).
Nola Taylor Redd, "Life on Jupiter moon Europa may hide in depths to survive," (4 April 2012).
Christopher F. Chyba & Cynthia B. Phillips, "Possible ecosystems and the search for life on Europa," PNAS 98(3): 801–804 (30 January 2001).
Everett K. Gibson et al, "The case for relic life on Mars," Scientific Amercian 58–65 (December 1997).
Levin Gilbert V. & Straat Patricia Ann, "The case for extant life on mars and its possible detection by the Viking labeled release experiment," Astrobiology 16(10): 798–810 (October 2016).
Stuart Gary, "Picture perfect proof that Mars once had wet seasons," ABC Science (15 December 2014).
Kenneth Chang, "Methane is found on mars, raising hope of life there now," The New York Times (16 December 2014).
Jennifer Chu, "Losing air," MIT News (2 December 2014).
S. Marchi et al, "Widespread mixing and burial of Earth's Hadean crust by asteroid impacts," Nature 511: 578–582 (31 July 2014).
Elizabeth Gibney, "Asteroids wreaked havoc on early Earth," Nature (30 July 2014).
Matthias Willbold et al, "The tungsten isotopic composition of the Earth's mantle before the terminal bombardment," Nature 477 (7363): 195 (7 September 2011).
Richard A. Kerr, "Asteroid model shows early life suffered a billion-year battering," Science 332 (6027): 302–303 (15 April 2011).
William F. Bottke et al, "An Archaeon heavy bombardment from a destabilized extension of the asteroid belt," Nature 485: 78–81 (3 May 2012).
Nadia Drake, "Earth's beating lasted longer," Science News 8 (2 June 2012).
William J. Broad, "Flecks of extraterrestrial dust, all over the roof," The New York Times (10 March 2017).
Erin Wayman, "Maybe Earth's chlorine blew away," Science News 183(11): 14 (1 June 2013).
The Moon
Thomas Sumner, "Competing ideas abound for how Earth got its Moon," Science News (4 April 2017).
Melanie Barboni et al, "Early formation of the Moon 4.51 billion years ago," Science Advances (11 January 2017).
"The Moon is older than scientists thought," ScienceDaily (12 January 2017).
Maylis Landeau et al, "Core merging and stratification following giant impact," Nature Geoscience (12 September 2016).
Matija Cuk et al,"Tidal evolution of the Moon from a high-obliquity, high-angular-momentum Earth," Nature (31 October 2016).
"Scientists' finding supports moon creation hypothesis," ScienceDaily (26 September 2016).
Raluca Rufu et al, "A multiple-impact origin for the Moon," Nature Geoscience (9 January 2017).
"Study crashes main Moon-formation theory," (9 January 2017).
Robin M. Camp, "Forming a Moon with an Earth-like composition via a giant impact," Science 338(6110): 1052–1055 (23 November 2012).
Alessandra Mastrobuono-Battisti et al, "A primordial origin for the compositional similarity between the Earth and the Moon," Nature 520: 212–215 (09 April 2015).
"How do you solve a problem like maria?," The Economist (6 August 2011).
Robert M. Hazen, The Story of Earth, Viking (2012).
Matija Cuk & Sarah T. Stewart, "Making the moon from a fast-spinning Earth: a giant impact followed by resonant despinning," Science 338(6110): 1047–1052 (23 November 2012).
Thomas Sumner, "Fast-spinning young Earth pulled the moon into a yo-yo orbit," Science News (18 March 2015).
Emil Noordeh et al, "Simulating the phases of the Moon shortly after its formation," arXiv:1503.03041 [physics.pop-ph] (10 March 2015).
Ian Garrick-Bethell et al, "The tidal–rotational shape of the Moon and evidence for polar wander," Nature (30 July 2014).
Satoshi Ide et al, "Earthquake potential revealed by tidal influence on earthquake size–frequency statistics," Nature Geoscience (12 Sep-tember 2016).
Rebecca Boyle, "More evidence that the moon contributes to earthquakes," The Atlantic (12 September 2016).
M. Jutzi & E. Asphaug, "Forming the lunar farside highlands by accretion of a companion moon," Nature 476: 69–72 (4 August 2011).
Nadia Drake, "A shadowed past," Science News 180(9): 20–21 (22 October 2011).
Ron Cowen, "The damp moon: water found inside and out," Science News 176(9): 10 (24 October 2009).
Yuji Harada et al, "Strong tidal heating in an ultralow-viscosity zone at the core–mantle boundary of the Moon," Nature Geoscience (27 July 2014).
Thomas R. Watters et al, "Evidence of recent thrust faulting on the Moon revealed by the lunar reconnaissance orbiter camera," Science 329(5994): 936–940 (20 August 2010).
Paul Scruton, "10 things you should know about the supermoon," The Guardian (9 September 2014).
"Lunar volcanoes suggest the moon may still be warm," New Scientist (15 October 2014).
"Death by moonlight? Not always," Science Daily (22 October 2013).
Ralph E. Milliken & Shuai Li, "Remote detection of widespread indigenous water in lunar pyroclastic deposits," Nature Geophysics (24 July 2017).
"Moon has a water-rich interior," ScienceDaily (24 July 2017).
Life Under the Moon
Cameron Walker, "Moonstruck," Aeon Magazine (22 April 2014).
Laura R. Prugh & Christopher D. Golden, "Does moonlight increase predation risk? Meta-analysis reveals divergent responses of nocturnal mammals to lunar cycles," Journal of Animal Ecology 83(2): 504–514 (March 2014).
Helen Pearson, "Pull of the Moon," Nature (1 September 2006).
Earth's Final Formation
James F. Kasting, "Early Earth: faint young Sun redux," Nature 464: 687-689 (1 April 2010).
Helen Thompson, "Ancient asteroids kept on coming," Nature 484: 429 (26 April 2012).
Dennis Overbye, "Jupiter: our cosmic protector?," The New York Times (26 July 20009).
William B. Moore & A. Alexander G. Webb, "Heat-pipe Earth," Nature 501: 501–504 (26 September 2013).
Tim E. Johnson et al, "Earth’s first stable continents did not form by subduction," Nature (27 February 2017). Alexandra Witze, "Plate tectonics got a bumpy start," Science News 11 (2 June 2012).
"The Nd of the innocence," Science 340: 1142 (7 June 2013).
Steven B. Shirey & Stephen H. Richardson, "Star of the Wilson cycle at 3 Ga shown by diamonds from Subcontinental mantle," Science 333: 434–436 (22 July 2011).
Martin J. Van Kranendonk, "Onset of plate tectonics," Science 333: 413–414 (22 July 2011).
Dennis Höning et al, "Biotic vs. abiotic Earth: a model for mantle hydration and continental coverage," Planetary and Space Science (October 2013).
Michael Slezak, "Early life built Earth's continents," New Scientist (25 November 2013).
"Mercury mineral evolution tied to supercontinent assembly over last 3 billion years," ScienceDaily (25 June 2012).
"Earth's mineral evolution," Astrobiology Magazine (14 November 2008).
Sarah Simpson, "Violent origins of continents," Scientific American 302(1): 32 (January 2010).
Thomas Sumner, "Earth’s mantle may be hotter than thought," Science News (2 March 2017).
Tilt & Spin
Kim Krieger, "Garden gnome tests Earth's gravity," Science (21 March 2012).
Water Supply
Zdenek Futera et al, "Formation and properties of water from quartz and hydrogen at high pressure and temperature," Earth and Planetary Science Letters 461: 54-60 (1 March 2017).
Jamie Deasy, "Earth's water may have originally been formed deep within its mantle, study shows," (3 February 2017).
L. Ilsedore Cleeves et al, "The ancient heritage of water ice in the solar system," Science 345(6204): 1590–1593 (26 September 2014).
"Why is Earth so dry? Planet formed from rocky debris in hotter region, inside of solar system's 'snow line'," ScienceDaily (17 July 2012).
"Earth's hot formation may solve water shortage mystery," (17 July 2012).
Lydia J. Hallis et al, "Evidence for primordial water in Earth’s deep mantle," Science 350(6262): 795–797 (13 November 2015).
"Origin of Earth’s water traced back to the birth of our planet," New Scientist (12 November 2015).
Paul Hartogh et al, "Ocean-like water in the Jupiter-family comet 103P/Hartley 2," Nature (5 October 2011).
Colin Barras, "Planet Earth was blue long before we knew," New Scientist (30 August 2013).
Paul Hartogh et al, "Ocean-like water in the Jupiter-family comet 103P/Hartley 2," Nature 478: 218–220 (13 October 2011).
"Solar system ice: source of Earth's water," ScienceDaily (12 July 2012).
C. M. O'D. Alexander et al, "The provenances of asteroids, and their contributions to the volatile inventories of the terrestrial planets," Science (12 July 2012).
Henry H. Hsieh, "Asteroids: a frosty finding," Nature 464: 1286–1287 (29 April 2010).
Ron Cowen, "Liquid acquisition," Science News 179 (2): 26 (15 January 2011).
Alberto E. Saal et al, "Hydrogen isotopes in lunar volcanic glasses and melt inclusions reveal a carbonaceous chondrite heritage," Sciencexpress (9 May 2013).
Ron Cowen, "Common source for Earth and Moon water," Nature (9 May 2013).
Christopher Crockett, "Quest to trace origin of Earth’s water is 'a complete mess'," Science News (5 August 2015).
Christina L. De La Rocha, "In hot water," Nature 443(26): 920–921 (23 October 2006).
D.G. Pearson et al, "Hydrous mantle transition zone indicated by ringwoodite included within diamond," Nature 507: 221–224 (13 March 2014).
Birger Schmitz, "Earth science: how a world came to be," Nature 485: 39 (3 May 2012).
Frank H.T. Rhodes, Earth: A Tenant's Manual, Cornell University Press (2012).
Don L. Anderson & Scott D. King, "Driving the Earth machine?," Science 346(6214): 1184–1185 (5 December 2014).
Kei Hirose et al, "Crystallization of silicon dioxide and compositional evolution of the Earth’s core," Nature (22 February 2017).
"'Quartz' crystals at the Earth's core power its magnetic field," (22 February 2017).
Natalie Angier, "The enigma 1,800 miles below us," The New York Times (28 May 2012).
Kenneth C. Creager, "Earth science: solid evidence in the inner core," Nature 454: 833–835 (14 August 2008).
James Wookey & George Helffrich, "Inner-core shear-wave anisotropy and texture from an observation of PKJKP waves," Nature 454: 873–876 (14 August 2008).
A.J. Biggin et al, "Palaeomagnetic field intensity variations suggest Mesoproterozoic inner-core nucleation," Nature 526: 245–248 (8 October 2015).
Andrew John Biggin, "How we discovered that the Earth's inner core is older than previously though," (9 October 2015).
Thomas Sumner, "Solid inner, inner core may be relic of Earth’s earliest days," Science News 189(2): 8 (23 January 2016).
Monica Pozzo et al, "Thermal and electrical conductivity of iron at Earth's core conditions," Nature 485: 355–358 (17 May 2012).
Benjamí Martorell et al, "Strong premelting effect in the elastic properties of hcp-Fe under inner-core conditions," Science (10 October 2013).
Earth's Magnetic Field
"Earth's magnetic field 'simpler than we thought'," ScienceDaily (7 July 2017).
A. Hausoel et al, "Local magnetic moments in iron and nickel at ambient and Earth’s core conditions," Nature Communications (12 July 2017).
"Nickel is crucial for Earth's magnetic field," Würzburg University (13 July 2017).
Richard A. Kerr, "Earth's inner core is running a tad faster than the rest of the planet," Science 309(5739): 1313 (26 August 2005).
Philip W. Livermore et al, "Electromagnetically driven westward drift and inner-core superrotation in Earth's core," PNAS (16 September 2013).
Douglas Palmer, A History of Earth, Firefly Books (2011).
Thomas Sumner, "Mystery at the center of the Earth," Science News (19 September 2015).
John A. Tarduno et al, "A Hadean to Paleoarchean geodynamo recorded by single zircon crystals," Science 349(6247): 521–524 (31 July 2015).
Ancient crystals show Earth’s magnetic field switched on early," New Scientist (31 July 2015).
Moira Jardine, "Sunscreen for the young Earth," Science 327(5970): 1206–1207 (5 March 2010).
Julien Aubert et al, "Bottom-up control of geomagnetic secular variation by the Earth's inner core," Nature 502: 219-223 (15 October 2013).
"Magnetic field, mantle convection and tectonics," ScienceDaily (27 July 2012).
J.M. Aurnou et al, "Rotating convective turbulence in Earth and planetary cores," Physics of the Earth and Planetary Interiors 246: 52–71 (September 2015).
A.J. Biggin et al, "Possible links between long-term geomagnetic variations and whole-mantle convection processes," Nature Geoscience (29 July 2012).
John Matson, "Shields up," Scientific American 302(5): 17–19 (May 2010).
Elizabeth Howell, "How did early Earth protect itself against the cold?," (7 February 2014).
Van Allen Belts
G.D. Reeves et al, "Electron acceleration in the heart of the Van Allen radiation belts," Sciencexpress (25 July 2013).
Mary K. Hudson, "A fast lane in the magnetosphere," Nature 504: 383–384 (19/26 December 2013).
R.M. Thorne et al, "Rapid local acceleration of relativistic radiation-belt electrons by magnetospheric chorus," Nature 504: 411–414 (19/26 December 2013).
"Van Allen probes discover a new radiation belt," Science@NASA (28 February 2013).
Ron Cowen, "Mystery of Earth's radiation belts solved," Nature News (25 July 2013).
D.N. Baker et al, "An impenetrable barrier to ultrarelativistic electrons in the Van Allen radiation belts," Nature 515: 531–534 (27 November 2014).
Polarity Reversal
"Earth not due for a geomagnetic flip in the near future," ScienceDaily (23 November 2015).
Alexandra Witze, "Earth's magnetic field may flip fast," Science News 178(7): 10 (25 September 2010).
Alexandra Witze, "Pole flips tied to plate tectonics," Science News 180(11): 9 (19 November 2011).
Annie Sneed, "Earth's impending magnetic flip," Scientific American (16 September 2014).
Huapei Wang et al, "Weaker axially dipolar time-averaged paleomagnetic field based on multidomain-corrected paleointensities from Galapagos lavas," PNAS (23 November 2015).
Kenneth Chang, "Ancient jars hold clues about Earth’S fluctuating magnetic fields," The New York Times (14 February 2017).
Erez Ben-Yosef et al, "Six centuries of geomagnetic intensity variations recorded by royal Judean stamped jar handles," PNAS (13 February 2017).
Eugene Robertson, "The interior of the earth," USGS (2007).
Oliver Tschauner et al, "Discovery of bridgmanite, the most abundant mineral in Earth, in a shocked meteorite," Science 346(6213): 1100–1102 28 (November 2014).
Li Zhang et al, "Disproportionation of (Mg,Fe)SiO3 perovskite in Earth's deep lower mantle," Science 344(6186): 877–882 (23 May 2014).
P. Poli et al, "Body-wave imaging of Earth's mantle discontinuities from ambient seismic noise," Science 338: 1063–1065 (23 November 2013).
Christoph J. Sahle et al, "Microscopic structure of water at elevated pressures and temperatures," PNAS (11 March 2013).
Richard A. Kerr, "The deep Earth machine is coming together," Science 340(6128): 22–24 (4 April 2013).
Don L. Andersona & James H. Natland, "Mantle updrafts and mechanisms of oceanic volcanism," PNAS (8 September 2014).
Sid Perkins, "Ancient crust rises from the deep," Nature (24 April 2013).
Rita A. Cabral et al, "Anomalous sulphur isotopes in plume lavas reveal deep mantle storage of Archaean crust," Nature 496: 490–493 (24 April 2013).
Day Length
"Earth's core affects length of day," ScienceDaily (11 July 2013).
R. Holme & O. de Viron, "Characterization and implications of intradecadal variations in length of day," Nature 499: 202–205 (11 July 2013).
Mark Viney, "Stutters in Earth's spin change day length," New Scientist (10 July 2013).
The End
David T. Chuss, "Will the universe expand forever?," NASA (2013).
Simon P. Driver et al, "Galaxy And Mass Assembly (GAMA): panchromatic data release (far-UV–far-IR) and the low-z energy budget," Monthly Notices of the Royal Astronomical Society (16 July 2015).
David Adam, "Universe is fading away, say astronomers," The Guardian (18 August 2003).
Ian Sample, "Universe slowly dying as old stars fade faster than new ones are born," The Guardian (10 August 2015).
Robert R. Caldwell et al, "Phantom energy: dark energy with ? <– 1 causes a cosmic doomsday," Physical Review Letters 91(7): 1301–1304 (13 August 2003).
Marcelo M. Disconzi et al, "New approach to cosmological bulk viscosity, Physical Review D (27 February 2015).
Hannah Devlin, "This is the way the world ends: not with a bang, but with a Big Rip," The Guardian (3 July 2015).
"Collapse of the universe is closer than ever before," ScienceDaily (12 December 2013).
Dennis Overbye, "Stalking the shadow universe," The New York Times (16 July 2014).

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Isaac Newton
Sarah Dry, The Newton Papers: The Strange and True Odyssey of Isaac Newton's Manuscripts, Oxford University Press (2014).
Laws of Thermodynamics
Anatoli Polkovnikov & Dries Sels, "Thermalization in small quantum systems," Science 353(6301): 752–753 (19 August 2016).
Thermalization Thwarted
"Solid state physics: quantum matter stuck in unrest," ScienceDaily (31 July 2015).
Mark G. Raizen, "Demons and the quest entropy for absolute zero," Scientific American 304(3): 54–59 (June 2011).
Laura Sanders, "Nanoclusters battle second law," Science News 13 (9 May 2009).
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So Bitter Cold That It's Hot
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From Classical to Modern Physics
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The Inscrutability of Infinity
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The Imaginary Complexity of Reality
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Albert Einstein
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Special Relativity
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General Relativity
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Zeno Effect
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Black Holes & Quasars
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Black-Body Radiation
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Galactic Gyres
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Matryoshka Reality
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Quantum Mechanics
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The Standard Model
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The ACME Collaboration, "Order of magnitude smaller limit on the electric dipole moment of the electron," Science (19 December 2013).
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Fermions & Bosons
Peter Skands, "Particle physics: the mass of a top," Nature (8 October 2014).
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Andrew Grant, "First four-quark particle may have been spotted," Science News (21 June 2013).
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Particle Demolition Derby
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Eugenie Samuel Reich, "Neutrino oscillations measured with record precision," Nature (8 March 2012).
The Daya Bay Collaboration, "Observation of electron-antineutrino disappearance at Daya Bay" (8 March 2012).
Edwin Cartiledge, "Are neutrinos their own antiparticles?," Science (16 July 2013).
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Higgs Boson
Amir D. Aczel, "Particles that flock," Scientific American 304(2): 30 (February 2011).
Davide Castelvecchi, "Is supersymmetry dead?" Scientific American 306(5): 18 (May 2012).
Adrian Cho, "At long last, physicists discover famed Higgs boson," Science (4 July 2012).
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The CMS Collaboration, "Evidence for the direct decay of the 125 GeV Higgs boson to fermions," Nature Physics (22 June 2014).
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Spontaneous Symmetry Breaking
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Ghost Fields
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Davide Castelvecchi, "Ephemeral antimatter atoms pinned down in milestone laser test," Nature (19 December 2016).
Matter-Antimater Asymmetry
Ron Cowen, "Antimatter belt found circling Earth," Science (9 August 2011).
Alexandra Witze, "Earth's antiprotons," Science News (10 August 2011).
Ron Cowen, "Sign of antimatter seen in lightning," Science News 176(12): 9 (5 December 2009).
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Jon Cartwright, "Evidence for antimatter anomaly mounts," Science (29 February 2012).
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CP Violation
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Nuclear Forces
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Lorentz Symmetry
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Emily Conover, "Faux particles commit physics faux pas," Science News (12 June 2017).
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Andrew Grant, "Elusive particle shows up in ‘semimetal’," Science News (16 July 2015).
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Tom Siegfried, "A new view of gravity," Science News 178(7): 26 (25 September 2010).
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Dennis Overbye, "Gravitational waves detected, confirming Einstein’s theory," The New York Times (11 February 2016).
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Quantum Gravity
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Classical Gravity
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Bose-Einstein Condensate
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The Ground State
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The Dance of Spacetime
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String Theory
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Amanda Gefter, "Mystery physics: What does the M in M-theory mean?," New Scientist (20 April 2014).
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Stringy Liquids
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Entanglement Out of Time
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The Computing Paradigm
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Tom Siegfried, "Bits of reality," Science News 181(7): 26–34 (7 April 2012).
Tom Siegfried, "A new view of gravity," Science News 178(7): 26–29 (25 September 2010).
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Information Theory
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The Holographic Principle
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Cosmic Aether
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Gravity & Thermodynamics
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Holistic Dimensionality
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Meditation Sutras
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Dark Matter
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Ettore Majorana
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Majorana Fermion
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Dark Matter & Galaxies
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Cosmic Caulk
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Dark Energy
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The Hubble Constant
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Expanding Into...?
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Wormhole Entanglement
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Matryoshka Transition
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Superconductivity Seam
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Constructal Law
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Self-Organized Criticality
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Nuclear Clusters
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Magic Nuclei
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Periodic Table of Elements
Periodic table of the elements diagram courtesy of Sandbh.
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Bad Metals
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Gamma Rays
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Cosmic Radiation
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Watch That Dial
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Eternal Element
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Bonds Beyond
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HD Harmonically Bound
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van der Waals forces
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Molecular Geometry
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Triple Point
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Energy Transitions
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Surface Tension
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Mpemba Effect
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Organic Role
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Fear of Water
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Water Memory
Harriet Hall, "Homeopathy has no basis in science," Scientific American (November 2016). Nicola Davis & Denis Campbell, "'A misuse of scarce funds': NHS to end prescription of homeopathic remedies," The Guardian (21 July 2017).
E. Davenas et al, "Human basophil degranulation triggered by very dilute antiserum against IgE," Nature 333: 816–818 (30 June 1988).
Edzard Ernst, "Why I changed my mind about homeopathy," The Guardian (3 April 2012).
Helen Davidson, "Homeopathy is bunk, study says," The Guardian (8 April 2014).
Sheila Kaplan, "Hundreds of babies harmed by homeopathic remedies, families say," Scientific American (21 February 2017).
Organic Chemistry
N.J. Tosca et al, "Water activity and the challenge for life on early Mars," Science 320 (5880): 1204 (2008).
Edelsys Codorniu-Hernández & Peter G. Kusalik, "Probing the mechanisms of proton transfer in liquid water," PNAS 110(34): 13697–13698 (20 August 2013).
Ali Hassanali et al, "Proton transfer through the water gossamer," PNAS 110(34): 13723–13728 (20 August 2013).
Sergey Koroidov et al, "Mobile hydrogen carbonate acts as proton acceptor in photosynthetic water oxidation," PNAS (7 April 2014).
Christopher Kupitz et al, "Serial time-resolved crystallography of photosystem II using a femtosecond X-ray laser," Nature (9 July 2014).
Nick Lane, Life Ascending: The Ten Great Inventions of Evolution, 66, W. W. Norton & Company (2010).
Franklin D. Fuller et al, "Vibronic coherence in oxygenic photosynthe-sis," Nature Chemistry (13 July 2014).
Moritz Malischewski & K. Seppelt, "Crystal Structure Determination of the Pentagonal-Pyramidal Hexamethylbenzene Dication C6(CH3)62+," Angewandte Chemie (25 November 2016).
Laurel Hamers, "Cabon can exceed four-bond limit," Science News (4 February 2017).
Rebecca Boyle, "Carbon seen bonding with six other atoms for the first time," New Scientist (11 January 2017).
Carbon Cycle
Edward Brook, "The Ice Age carbon puzzle," Science 336( 6082): 682–683 (11 May 2012).
Jochen Schmitt et al, "Carbon isotope constraints on the deglacial CO2 rise from ice cores," Science 336( 6082): 711–714 (11 May 2012).
In the Ocean
Elisabeth Sikes, "Earth science: how the ocean exhales," Nature 495: 454–455 (28 March 2013).
A.N. Meckler et al, "Deglacial pulses of deep-ocean silicate into the subtropical North Atlantic Ocean," Nature 495: 495–498 (28 March 2013).
Seagrass Meadows
James W. Fourqurean et al, "Seagrass ecosystems as a globally significant carbon stock," Nature Geoscience (20 May 2012).
"Seagrasses can store as much carbon as forests," ScienceDaily (23 May 2012).
On Land
"Dryland ecosystems drivers of global carbon cycle," Nature World News (22 May 2014).
Benjamin Poulter et al, "Contribution of semi-arid ecosystems to interannual variability of the global carbon cycle," Nature (21 May 2014).
M. Fernández-Martínez et al, "Nutrient availability as the key regulator of global forest carbon balance," Nature Climate Change (6 April 2014).
Charles Petit, "Soil's hidden secrets," Science News 181 (2): 16–20 (28 January 2012).
Nitrogen Cycle
Edward A.G. Schuur, "Nitrogen from the deep," Nature 477: 39–40 (1 September 2011).
Maren Voss & Susanna Hietanen, "Biogeochemistry: the depths of nitrogen cycling," Nature 493: 616–618 (31 January 2013).
D.A. Brook et al, "DON as a source of bioavailable nitrogen for phytoplankton," Biogeosciences 4: 283–-296 (2007).
T.B. Meador et al, "Isotopic heterogeneity and cycling of organic nitrogen in the oligotrophic ocean," Limnology and Oceanography 52(3): 934–947 (2007).
Scott L. Morford et al, "Increased forest ecosystem carbon and nitrogen storage from nitrogen rich bedrock," Nature 477: 78–81 (1 September 2011).
Bess B. Ward, "How nitrogen is lost," Science 341: 352–353 (26 July 2013).
James J. Elser, "A world awash with nitrogen," Science 334: 1504–1505 (16 December 2011).
Gordon W. Holtgrieve et al, "A coherent signature of anthropogenic nitrogen deposition to remote watersheds of the northern hemi-sphere," Science 334: 1545–1548 (16 December 2011).
Kendra K. McLauchlan et al, "Changes in global nitrogen cycling during the Holocene epoch," Nature 495: 352–355 (21 March 2013).
Peter Hietz et al, "Long-term change in the nitrogen cycle of tropical forests," Science 334: 664–666 (4 November 2011).
Fritz Haber
Klaus Berndl et al, Visual History of the World, National Geographic (2005) Oxygen – Molecular Forms
Timothy M. Lenton, "The coupled evolution of life and atmospheric oxygen," in Evolution on Planet Earth, Academic Press (2003).
Apollo 1
"NASA Langley Research Center's Contributions to the Apollo Program" NASA Langley Research Center (undated).
Sam Kean, The Disappearing Spoon, 187, Little, Brown and Company (2010).
Atmospheric Oxygen
Alexandra Witz, "Interstellar oxygen bar," Science News (10 August 2011).
Sean A. Crowe et al, "Atmospheric oxygenation three billion years ago," Nature 501: 535–538 (26 September 2013).
Sid Perkins, "Tiny crystals in Australian rocks suggest earlier debut for oxygen," Science News 175(8): 9 (11 April 2009).
Solmaz Barazesh, "Drop in oceanic nickel may have set stage for atmospheric oxygen," Science News 175(10): 14 (9 May 2009).
Alexandra Witze, "Plate tectonics got a bumpy start," Science News 11 (2 June 2012).
"The Nd of the innocence," Science 340: 1142 (7 June 2013).
Eniko Bali et al, "Water and hydrogen are immiscible in Earth's mantle," Nature 495: 220–223 (14 March 2013).
Robert M. Hazen, "Evolution of minerals," Scientific American 302(3): 58–65 (March 2010).
Andrew H. Knoll, "Breathing room for early animals," Nature 382: 111–112 (11 July 1996).
"Life & Atmospheric Oxygen" chart adapted from Lost Creatures of the Earth by Joe Erickson, Checkmark Books (2001).
Jane J. Lee, "The first oxygen users?," Science (10 January 2012).
Alison M. Smith et al, Plant Biology, Garland Science (2010).
J. Payne et al, "Late Paleozoic fusulinoidean gigantism driven by atmospheric hyperoxia," Geological Society of America Meeting, Min-neapolis, Minnesota (12 October 2011).
Devin Powell, "Oxygen blew up ancient amoebas," Science News (13 October 2011).
Ben Harder, "Air's oxygen content constrains insect growth," Science News 170 (17): 270 (21 October 2006).
"Study finds new moves in protein's evolution," ScienceDaily (29 September 2013).
Susanne Still et al, "Thermodynamics of prediction," Physical Review Letters 109(12): 120604–120609 (19 September 2012).
Philip Ball, "Proteins remember the past to predict the future," Nature (4 October 2012).
"Reaction rate of many molecules depends on their shape," (3 October 2013).
Yuan-Pin Chang et al, "Specific chemical reactivities of spatially separated 3-aminophenol conformers with cold Ca+ ions," Science 342: 98–101 (4 October 2013).
Protein Folding
"Protein origami: quick folders are the best," ScienceDaily (31 January 2013).
Florian Georgescauld et al, "GroEL/ES chaperonin modulates the mechanism and accelerates the rate of TIM-barrel domain folding," Cell 157(4): 922–934 (8 May 2014).
Deepa Nath & Sadaf Shadan, "Dynamics of the cell," Nature 475: 307 (21 July 2011).
F. Ulrich Hartl et al, "Molecular chaperones in protein folding and proteostasis," Nature 475: 324–332 (21 July 2011).
Andrea Soranno et al, "Quantifying internal friction in unfolded and intrinsically disordered proteins with single-molecule spectroscopy," PNAS (6 April 2012).
A. Keith Dunker & Richard W. Kriwacki, "The orderly chaos of proteins," Scientific American 204(4): 68–73 (April 2011).
M. Madan Babu et al, "Versatility from protein disorder," Science 337: 1460–1461 (21 September 2012).
Tina Hesman Saey, "Neuron killers," Science News 174(4): 22 (16 August 2008).
Björn M. Burmann et al, "An a helix to ß barrel domain switch transforms the transcription factor RfaH into a translation factor," Cell 150(2): 291–303 (20 July 2012).
Gira Bhabha et al, "Divergent evolution of protein conformational dynamics in dihydrofolate reductase," Nature Structural & Molecular Biology (29 September 2013).
Hojung Nam et al, "Network context and selection in the evolution to enzyme specificity," Science 337(6098): 1101–1104 (31 August 2012).
Rachel Ehrenberg, "Big jobs go to loyal proteins," Science News (31 August 2012).
Till Biskup et al, "Unexpected electron transfer in cryptochrome identified by time-resolved EPR spectroscopy," Angewandte Chemie 50(52): 12647–12651 (December 23, 2011).
Rachel Ehrenberg, "Protein detects when lungs fill with air," Science News (4 February 2017).
Amino Acids
"Enzymatic synthesis of pyrrolysine, the mysterious 22nd amino acid," ScienceDaily (18 November 2011).
Synopsis – Organic Chemistry
Nicholas F. Dupuis et al, "Molecular-crowding effects on single-molecule RNA folding/unfolding thermodynamics and kinetics," PNAS (21 May 2014).

Life Begins
Origin On Earth
Nicholas Wade, "New glimpses of life's puzzling origin," The New York Times (16 June 2009).
Allen P. Nutman et al, "Rapid emergence of life shown by discovery of 3,700-million-year-old microbial structures," Nature (31 August 2016).
Matthew S. Dodd et al, "Evidence for early life in Earth’s oldest hydrothermal vent precipitates," Nature 543: 60-64 (1 March 2017).
"The origins of life: a new fossil could push back the start of life on Earth," The Economist (4 March 2017).
Martin J. Van Kranendonk et al, "Life springs," 317(2): 28-35 Scientific American (August 2017).
"Did life begin on land rather than in the sea?," ScienceDaily (18 July 2017).
Elizabeth A. Bell et al, "Potentially biogenic carbon preserved in a 4.1 billion-year-old zircon," PNAS (19 October 2015).
"Life on Earth likely started 4.1 billion years ago—much earlier than scientists thought," (19 October 2015).
Press Association, "Life on Earth may have begun 300m years earlier than previously thought," The Guardian (19 October 2015).
Sarah C.P. Williams, "Traces of inaugural life," Science News 181(10): 22 (19 May 2012).
Helen Thompson, "Ancient asteroids kept on coming," Nature (25 April 2012).
Alexandra Witze, "Meteorites contain chemicals linked to life," Science News (10 August 2011).
Fred J. Ciesla & Scott A. Sandford, "Organic synthesis via irradiation and warming of ice grains in the solar nebula," Science (29 March 2012).
Michael P. Callahan et al, "Carbonaceous meteorites contain a wide range of extraterrestrial nucleobases," PNAS (11 August, 2011).
Rachel Ehrenberg, "Comet dust harbors life's building blocks," Science News 176(6): 8 (12 September 2009).
Ron Cowen, "An odd place for life's ingredients," Science News 179(3): 12 (29 January 2011).
A.I. Oparin (translated by Sergius Morgulus), The Origin of Life, Macmillan (1938).
Tony Human & Cliff Brangwynne, "The Origin of Life," Nature 491: 524–525 (22 November 2012).
Alexander S. Bradley, "Expanding the limits of life," Scientific American 301(6): 62–67 (December 2009).
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Brian Switek, "Debate bubbles over the origin of life," Nature (13 February 2012).
Maarten J. de Wit & Harald Furnes, "3.5-Ga hydrothermal fields and diamictites in the Barberton Greenstone Belt—Paleoarchean crust in cold environments," Science Advances (26 February 2016).
Beth Geiger, "3.5 billion years ago, oceans were cool, not hot," Science News (26 February 2016).
Martin D. Brasier et al, "Pumice as a remarkable substrate for the origin of life," Astrobiology (2011).
"Ocean-floor migration," The Economist (28 April 2011).
Brandon K. Swan et al, "Potential for chemolithoautotrophy among ubiquitous bacteria lineages in the dark ocean," Science 333: 1296–1299 (2 September 2011).
Rogier Braakman & D. Eric Smith, "The compositional and evolution-ary logic of metabolism," Santa Fe Institute (10 July 2012).
Aaron S. Burton et al, "A propensity for n-?-amino acids in thermally altered Antarctic meteorites," Meteoritics & Planetary Science 47(3): 374–386 (March 2012).
Devin Powell, "Rare earth elements plentiful in ocean sediments," Science News (3 July 2011).
"Quest for sugars involved in origin of life," ScienceDaily (16 February 2012).
J.M. Dreiling & T.J. Gay, "Chirally sensitive electron-induced molecular breakup and the Vester-Ulbricht hypothesis," Physical Review Letters (12 September 2014).
Elizabeth Gibney, "Force of nature gave life its asymmetry," Nature (25 September 2014).
Stanley L. Miller, "A production of amino acids under possible primitive Earth conditions," Science 117(3046): 528-529 (15 May 1953).
Fred J. Cielsa & Scott A. Sandford, "Organic synthesis via irradiation and warming of ice grains in the solar nebula," Science (29 March 2012).
Elbert Branscomb & Michael J. Russell, "Turnstiles and bifurcators: the disequalibrium converting engines that put metabolism on the road," Biochemica et Biophysica Acta (BBA) – Bioenergetics 1827(2): 62–78 (2 February 2013).
Paul Davies, "Are we alone in the universe?," The New York Times (18 November 2013).
RNA World
"DNA found outside genes plays largely unknown, potentially vital roles: thousands of previously unknown RNA molecules identified," ScienceDaily (26 June 2013).
Walter Gilbert, "Origin of life: the RNA world," Nature (20 February 1986).
Alonso Ricardo & Jack W. Szostak, "Life on Earth," Scientific American 301(3): 22 (September 2009).
Matthew A. Pasek et al, "Evidence for reactive reduced phosphorus species in the early Archean ocean," PNAS 110(25): 10089–10094 (18 June 2013).
Solmaz Barazesh, "Scientists identify chemical reactions that could be responsible for the origin of life," Science News 175(12): 5–6 (6 June 2009).
Jack W. Szostak, "Origins of life: Systems chemistry on early Earth," Nature 459: 171–172 (14 May 2009).
Matthew W. Powner et al, "Synthesis of activated pyrimidine ribonucleotides in prebiotically plausible conditions," Nature 459: 239–242 (14 May 2009).
Leslie E. Orgel, "Prebiotic chemistry and the origin of the RNA world," Critical Reviews in Biochemistry and Molecular Bilogy 39: 99-123 (2004). Antoine Baurdrimont et al, "Multiplexed gene control reveals rapid mRNA turnover," 3(7): e1700006 Science Advances (12 July 2017).
"RNA molecules live short lives," ScienceDaily (12 July 2017).
Nicholas Wade, "Making sense of the chemistry that led to life on Earth," The New York Times (4 May 2015).
Jef Akst, "RNA World 2.0," The Scientist (1 March 2014). Anton A. Polyansky et al, "Proteome-wide analysis reveals clues of complementary interactions between mRNAs and their cognate proteins as the physicochemical foundation of the genetic code," RNA Biology 10(8): 1248–1254 (August 2013).
Matea Hajnic et al, "Computational analysis of amino acids and their sidechain analogs in crowded solutions of RNA nucleobases with implications for the mRNA–protein complementarity hypothesis," Nucleic Acids Research 42(21): 12984–12994 (1 December 2014).
"The origin of the language of life," (19 December 2014).
Chrisopher A. Stulson et al, "RNA catalysis through compartmentalization," Nature Chemistry (14 October 2012).
Nilesh Vaidya et al, "Spontaneous network formation among cooperative RNA replicators," Nature 491: 72–74 (1 November 2012).
"Molecules assemble in water, hint at origins of life," Georgia Institute of Technology (20 February 2013).
Christopher Francklyn & Charles W. Carter Jr., "Aminoacylating urzymes challenge the RNA world hypothesis," Journal of Biological Chemistry (18 July 2013).
Matthew W. Powner et al, "Synthesis of activated pyrimidine ribonucleotides in prebiotically plausible conditions," Nature 459: 239-242 (14 May 2009).
Richard Van Noorden, "RNA world easier to make," Nature (13 May 2009).
Shaun Stairs et al, "Divergent prebiotic synthesis of pyrimidine and 8-oxo-purine ribonucleotides," Nature Communications (19 May 2017).
Robert F. Service, "Chemists may be zeroing in on chemical reactions that sparked the first life," Science (19 May 2017).
"How RNA formed at the origins of life," UCL News (19 May 2017).
Pyrite Life
Günter Wächtershäuser, "Life as we don't know it," Science 289(5483): 1307–1308 (25 August 2000).
G. Wächtershäuser, "Evolution of the first metabolic cycles," PNAS 87(1): 200–204 (1 January 1990).
E. Blöchl et al, "Reactions depending on iron sulfide and linking geochemistry with biochemistry," PNAS 89(17): 8117–8120 (1 September 1992).
William F. Martin et al, "Energy at life's origin," Science 344(1688): 1092–1093 (6 June 2014).
Christian de Duve & Stanley L. Miller, "Two-dimensional life?," PNAS 88(22): 10014–10017 (15 November 1991).
G. Wächtershäuser, "Life in a ligand sphere," PNAS 91(10): 4283–4287 (10 May 1994).
Roy A. Black et al, "Nucleobases bind to and stabilize aggregates of a prebiotic amphiphile, providing a viable mechanism for the emergence of protocells," PNAS 10(33): 13272–13276 (13 August 2013).
Ekaterina Sokolova et al, "Enhanced transcription rates in mem-brane-free protocells formed by coacervation of cell lysate," PNAS (2 July 2013).
Katarzyna Adamala & Jack W. Szostak, "Nonenzymatic template-directed RNA synthesis inside model protocells," Science 342(6162) 1098–1100 (29 November 2013).
Michael Marshall, "Synthetic primordial cell copies RNA for the first time," New Scientist (28 November 2013).
Emily Conover, "Life on Earth may have begun as dividing droplets," Science News (21 March 2017).
David Zwicker et al, "Growth and division of active droplets provides a model for protocells," Nature Physics (12 December 2016).
Romain Mercier et al, "Excess membrane synthesis drives a primitive mode of cell proliferation," Cell 152(5): 997–1007 (28 February 2013).
Jeff Errington, "L-form bacteria, cell walls and the origins of life," Open Biology (9 January 2013).
"How did early primordial cells evolve?," ScienceDaily (28 February 2013).
Wayne M. Becker et al, The World of the Cell, 3rd Edition, Benjamin Cummings (1996).
Biomolecular Evolution
Ibrahim Koç & Gustavo Caetano-Anollés, "The natural history of molecular functions inferred from an extensive phylogenomic analysis of gene ontology data," PLoS One (3 May 2017).
"New study sheds light on origins of life on Earth through molecular function," ScienceDaily (17 May 2017).
Water World
"Origin of life: chemistry of seabed's hot vents could explain emergence of life," ScienceDaily (27 April 2015).
A. Roldan et al, "Bio-inspired CO2 conversion by iron sulfide catalysts under sustainable conditions," Chemical Communications (24 March 2015).
Michael J. Russell et al, "The drive to life on wet and icy worlds," Astrobiology (15 April 2014).
"New study outlines 'water world' theory of life's origins," (15 April 2014).
Nick Lane & William F. Martin, "The origin of membrane bioenergetics," Cell 151(7): 1406–1416 (21 December 2012).
Ed Yong, "How life emerged from deep-sea rocks," Nature News (20 December 2012).
E.F. DeLong & N.R. Pace, "Environmental diversity of bacteria and archaea," Systematic Biology 50 (4): 470–478 (2001).
Andrew R. Thurber et al, "Archaea in metazoan diets: implications for food webs and biogeochemical cycling," International Society for Microbial Ecology Journal (March 2012).
"Scientists discover cosmic factory for making building blocks of life," ScienceDaily (15 September 2013).
David Warmflash & Benjamin Weiss, "Did life come from another world?," Scientific American 293(5): 64–71 (November 2005).
Jessica Shugart, "Cometlike crashes produce building blocks of life," Science News (19 October 2013).
Lisa Grossman, "Crack a comet to spawn the ingredients of life," New Scientist (16 September 2013).
Zita Martins et al, "Shock synthesis of amino acids from impacting cometary and icy planet surface analogues," Nature Geoscience (15 September 2013).
Raymond L. Menzel & Wayne G. Roberge, "Reexamination of induction heating of primitive bodies in protoplanetary disks," The Astrophysical Journal 775(2) (1 October 2013).
R.I. Kaiser et al, "On the formation of dipetides in interstellar model ices," The Astrophysical Journal 765(2) (10 March 2013).
Lisa Grossman, "Meteor impact trapped ancient swamp plants in glass," New Scientist (11 November 2013).
"Life on Earth shockingly comes from out of this world," ScienceDaily (5 June 2013).
Nir Goldman & Isaac Tamblyn, "Prebiotic chemistry within a simple impacting ice mixture," The Journal of Physical Chemistry (2 May 2013).
Edward Belbruno et al, "Chaotic exchange of solid material between planetary systems: implications for lithopanspermia," Astrobiology 12(8): 754–774 (12 September 2012).
"Irradiated space dust carries water to earth and other planets," Nature World News (24 January 2014).
John P. Bradley et al, "Detection of solar wind-produced water in irradiated rims on silicate minerals," PNAS (28 January 2014).
Life From Mars
Colin Barras, "No more primal soup: creating life without water," New Scientist (16 April 2014).
"Percival Lowell," BBC (2013).
"Ancient Martian lake system records two water-related events," Brown University (25 March 2015).
Jenna Iacurci, "Scientists discover signs of ancient water activity on mars," Nature World News (26 March 2015).
Robert M. Hazen, "Paleomineralogy of the Hadean eon: a preliminary species list," American Journal of Science 313(9): 807–843 (November 2013).
Nora Noffke, "Ancient sedimentary structures in the<3.7 Ga Gillespie Lake member, Mars, that resemble macroscopic morphology, spatial associations, and temporal succession in terrestrial microbialites, Astrobiology 15(2) (January 2015).
"We may all be Martians," European Association of Geochemistry (28 August 2013).
Eric Hand, "Mars rover finds long-chain organic compounds," Science 347(6229): 1402–1403 (27 March 2015).
Eric Hand, "'Fixed' nitrogen found in martian soil," Science 347(6229): 1402–1403 (27 March 2015).
"A warm little pond?," The Economist (14 December 2013).
"Did life come to Earth from Mars?," Smithsonian (28 August 2013).
Richard Webb, "Primordial broth of life was a dry Martian cup-a-soup," New Scientist (29 August 2013).
Lisa Grossman, "Martian soup may have been tasty to early life," New Scientist (1 September 2013).
Carl Zimmer, "A far-flung possibility for the origin of life," The New York Times (12 September 2013).
Andrew Grant, "Mars was habitable longer, more recently than thought," Science News (9 December 2013).
"Earth organisms survive under Martian conditions," (19 May 2014).
A Steele et al, "A reduced organic carbon component in Martian basalts ," Science (24 May 2012).
"New way to look at dawn of life: focus shifts from 'hardware' to 'software'," ScienceDaily (12 December 2012).
Sarah Imari Walker & Paul C.W. Davies, "The algorithmic origins of life," Interface (12 December 2012).
Life Rising
Eugene V. Koonin, "Temporal order of evolution of DNA replication systems inferred by comparison of cellular and viral DNA polymer-ases," Biology Direct (18 December 2006).
Detlef D. Leipe et al, "Did DNA replication evolve twice independent-ly?," Nucleic Acids Research 27(17): 3389–3401 (September 1999).
Microbes Everywhere
Catherine Brahic, "The 19 superbugs that rule Earth's hidden depths," New Scientist (6 December 2013).
Common Ancestor
Tina Hesman Saey, "All modern life on earth derived from common ancestor," Discovery News (14 May 2010).
Douglas L. Theobald, "A formal test of the theory of universal common ancestry," Nature 465: 219–222 (13 May 2010).
Nicholas Wade, "Meet Luca, the ancestor of all living things," The New York Times (25 July 2016).
Madeline C. Weiss et al, "The physiology and habitat of the last universal common ancestor," Nature Microbiology (25 July 2016).
Carl Woese, "The universal ancestor," PNAS 95(12): 6854–6859 (9 June 1998).
W. Ford Doolittle, "Uprooting the tree of life," Scientific American 90–95 (February 2000).
Rachel Ehrenberg, "As evidence of the influence of viruses escalates, appreciation of these master manipulators grows," Science News 176(8): 22–28 (10 October 2009).
"How ancient viruses became genomic 'superspreaders'," ScienceDaily (23 April 2012).
Patrick Forterre, "The origin of viruses and their possible roles in major evolutionary transitions," Virus Research (Mendeley) 117(1): 5–16 (2008).
Patrick Forterre, "Defining life: the virus viewpoint," Origins of Life and Evolution of the Biosphere 40: 151–160 (3 March 2010).
Curtis A. Suttle, "Viruses in the sea," Nature 437: 356–361 (15 September 2005).
Michael Slezak, "Origin of organs: thank viruses for your skin and bone," New Scientist (27 February 2014).
Masayuki Horie et al, "Endogenous non-retroviral RNA virus ele-ments in mammalian genomes," Nature 463: 84–87 (7 January 2010).
Robin A. Weiss & Jonathan P. Stoye, "Our viral inheritance," Science 340: 820–821 (17 May 2013).
"Study of giant viruses shakes up tree of life," ScienceDaily (13 September 2012).
Life Elsewhere
Leonie Mueck, "Cosmic chemistry: Life's molecules are made in space," New Scientist 2939 (21 October 2013).
Nadia Drake, "Life's building blocks grow close to home," Science News 181(8): 5 (21 April 2012).
"Oceans in space: not so lonely sea in the sky," The Economist (19 November 2016).
Frank Postberg, "Under the sea of Enceladus," Scientific American 315(4): 38–45 (October 2016).
William Herkewitz, "Why the warm ocean on this moon of Saturn could be perfect for life," Popular Mechanics (11 March 2015).
"Cassini finds global ocean in Saturn's moon Enceladus," NASA (15 September 2015).
D.C.B. Whittet, et al, "Observational constraints on methanol production in interstellar and preplanetary ices," The Astrophysical Journal, 742 (1): 28 (2011).
"Life on other planets could be far more widespread, study finds," (7 January 2014).
"Planets abound: astronomers estimate that at least 100 billion planets populate the galaxy," ScienceDaily (3 January 2013).
Erik A. Peigura et al, "Prevalence of Earth-size planets orbiting Sun-like stars," PNAS 110(48): 19273–19278 (26 November 2013).
Richard A. Lovett, "Tidal heating shrinks the 'goldilocks zone'," Nature (8 May 8, 2012).
Dennis Overbye, "Cosmic census finds billions of planets that could be like Earth," The New York Times (4 November 2013).
"Home away from home," The Economist (10 December 2011).
Nadia Drake, "Planet hunt finds lots of little ones," Science News 180(9): 18 (22 October 2011).
"Vatican astronomer cites possibility of extraterrestrial 'brothers'," The New York Times (undated electronic archive).
"Protocells may have formed in a salty soup," ScienceDaily (2 July 2013).
"Plenty more bugs in the sea," The Economist (24 March 2011).
Paul Davies, "Is anybody out there?," The Wall Street Journal (10 April 2010).

"Bacteria's hidden traffic control," ScienceDaily (8 February 2015).
Lynn Margulis, Origin of Eukaryotic Cells, Yale University Press (1971).
Katherine L. French et al, "Reappraisal of hydrocarbon biomarkers in Archean rocks," PNAS 112(19): 5915–5920 (12 May 2015).
Joseph L. Costello et al, "ACBD5 and VAPB mediate membrane associations between peroxisomes and the ER," The Journal of Cell Biology (20 January 2017).
"We all need contacts: How organelles hug in cells," ScienceDaily (20 January 2017).
Suzanne Wolff & Andrew Dillin, The stressful influence of microbes," Nature 508: 328–329 (17 April 2014).
Brenton D. Hoffman et al, "Dynamic molecular processes mediate cellular mechanotransduction," Nature 475: 316–323 (21 July 2011).
David Grüwald et al, "Nuclear export dynamics of RNA-protein complexes," Nature 475: 333–341 (21 July 2011).
Esther Lapuente-Brun et al, "Supercomplex assembly determines electron flux in the mitochondrial electron transport chain," Science 340: 1567–1570 (28 June 2013).
"Researchers reformulate the model of mitochondrial function," ScienceDaily (27 June 2013).
"What keeps a cell's energy source going?," ScienceDaily (27 November 2012).
Karthik Mallilankaraman et al, "MICU1 is an essential gatekeeper for MCU-mediated mitochondrial Ca2+ uptake that regulates cell survival," Cell 151(3): 630–644 (26 October 2012).
Karthik Mallilankaraman et al, "MCUR1 is an essential component of mitochondrial Ca2+ uptake that regulates cellular metabolism," Nature Cell Biology 14: 1336–1343 (25 November 2012).
Fiona A. Chandra et al, "Glycolytic oscillations and limits on robust efficiency," Science 333: 187–192 (8 July 2011).
Carolin Gerbeth et al, "Glucose-induced regulation of protein imnport receptor Tom22 by cystosolic and mitochondria-bound kinases," Cell Metabolism 18(4): 578–587 (4 October 2013).
Jun Zhang et al, "Altered proteome biology of cardiac mitochondria under stress conditions," Journal of Proteome Research (17 May 2008).
Richard J. Youle & Alexander M. van der Bliek, "Mitochondrial fission, fusion, and stress," Science 337(1062): 1062–1065 (31 Au-gust 2012).
Laura Bell, "Mitochondria gone bad," Science News 175(5): 20–23 (28 February 2009).
Douglas R. Green et al, "Mitochondria and the autophagy–inflammation–cell death axis in organismal aging," Science 333: 1109-1112 (26 August 2011).
Steph Yin, "Why do we inherit mitochondrial dna only from our mothers?," The New York Times (23 June 2016).
Qinghua Zhou et al, "Mitochondrial endonuclease G mediates breakdown of paternal mitochondria upon fertilization," Science 353(6297): 394-399 (22 July 2016).
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Endoplasmic Reticulum
"New insight in how cells' powerhouse divides," ScienceDaily (2 September 2011).
Angelikia S. Rambold & Jennifer Lippincott-Schwartz, "SevERing mitochondria," Science 334: 186–187 (14 October 2011).
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Bennett H. Penn & Jeffrey S. Cox, "Organelle stress triggers inflammation," Nature 532: 321-322 (21 April 2016).
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Golgi Complex
Yasuyuki Suda et al, "Rab GAP cascade regulates dynamics of Ypt6 in the Golgi traffic," PNAS (5 November 2013).
Plasma Membrane
Peter J. Collings, Liquid Crystals: Nature's Delicate Phase of Matter, Princeton University Press (2002).
Felix Spira et al, "Patchwork organization of the yeast plasma membrane into numerous coexisting domains," Nature Cell Biology (29 April 2012).
"Order in the chaos of a cell membrane," ScienceDaily (1 March 2013).
Cristina Stefaniu et al, "Subgel phase structure in monolayers of glycosylphosphatidylinositol glycolipids," Angewandte Chemie International Edition 51(51): 12874–12878 (14 December 2012).
Thommie Karlsson et al, "Fluxes of water through aquaporin 9 weaken membrane-cytoskeleton anchorage and promote formation of membrane protrusions," PLoS One (3 April 2013).
"Water governs cell movement: aquaporins play key role, new research finds," ScienceDaily (14 May 2013).
Chuan-Hsiang Huang et al, "An excitable signal integrator couples to an idling cytoskeletal oscillator to drive cell migration," Nature Cell Biology (20 October 2013).
Yuting Zhao et al, "Exo70 generates membrane curvature for morpho-genesis and cell migration," Developmental Cell 26(3): 266–278 (12 August 2013).
Arthur D. Lander, "How cells know where they are," Science 339: 923–927 (22 February 2013).
Urszula Kosinska Eriksson et al, "Subangstrom resolution X-ray structure details aquaporin-water interactions," Science 340: 1346–1347 (14 June 2013).
Jeff Abramson & Armand S. Vartanian, "Watch water flow," Science 340: 1294–1295 (14 June 2013).
Bert L de Groot & Helmut Grubmüller, "The dynamics and energetics of water permeation and proton exclusion in aquaporins," Current Opinion in Structural Biology 15(2): 176–183 (April 2005).
"Cell biology: calcium 'accelerator' keeps cell power supply going," ScienceDaily (25 November 2012).
Karthik Mallilankaraman et al, "MCUR1 is an essential component of mitochondrial Ca2+ uptake that regulates cellular metabolism," Nature Cell Biology 14: 1336–1343 (25 November 2012).
Lin Tang et al, "Structural basis for Ca2+ selectivity of a voltage-gated calcium channel," Nature (24 November 2013).
Gary J. Doherty & Harvey T. McMahon, "Mediation, modulation, and consequences of membrane-cytoskeleton interactions," Annual Review of Biophysics 37: 65–95 (June 2008).
Maria Lobikin et al, "Early, nonciliary role for microtubule proteins in left–right patterning is conserved across kingdoms," PNAS 109(31): 12586–12591 (31 July 2012).
"Human cells, worms, frogs and plants share mechanism for asym-metrical patterning: tubulin proteins," ScienceDaily (16 July 2012).
Sophie M Morgani & Joshua M Brickman, "Cell fate choice: Survival of the fattest," eLife (26 November 2013).
Mary Beth Gardiner, "The importance of being cilia," HHMI Bulletin (September 2005).
Philip Beales, "Cell tails: a surprising number," New Scientist (30 October 2013).
Veikko F. Geyer et al, "Cell-body rocking is a dominant mechanism for flagellar synchronization in a swimming alga," PNAS (21 October 2013).
Markus Meister et al, "The proton flux through the bacterial flagellar motor," Cell 49(50): 643–650 (5 June 1987).
Ilyong Jung et al, "Evidence for two extremes of ciliary motor response in a single swimming microorganism," Biophysical Journal 106(10): 106–113 (7 January 2014).
Markus Delling et al, "Primary cilia are specialized calcium signalling organelles," Nature 504: 311–314 (12 December 2013).
Marie Le Borgne & Andrey S. Shaw, "Do T cells have a cilium?," Science 342(6163): 1177–1178 (6 December 2013).
Maike de la Roche et al, "Hedgehog signaling controls T cell killing at the immunological synapse," Science 342(6163): 1247–1250 (6 December 2013).
James R. Davenport & Bradley K. Yoder, "An incredible decade for the primary cilium: a look at a once-forgotten organelle," American Journal of Physiology – Renal Physiology 289: F1159–F1169 (No-vember 2005).
Wallace Ravven, "Antenna on cell surface is key to development and disease," The New York Times (19 May 2009).
Tarek Hilal et al, "Structural insights into ribosomal rescue by Dom34 and Hbs1 at near-atomic resolution," Nature Communications (20 December 2016).
"Evolution of life's operating system revealed in detail," (30 June 2014).
Marna V. Rodnina, "Translocation in action," Science 340: 1534–1535 (28 June 2013).
Bethany S. Strunk et al, "A translation-like cycle is a quality control checkpoint for maturing 40s ribosome subunits," Cell 150(1): 111–121 (6 July 2012).
Anton S. Petrov et al, "Evolution of the ribosome at atomic resolution," PNAS (30 June 2014).
Jennifer Carpenter, "Multicellularity driven by bacteria," Science 337: 510 (3 August 2012).
Stella M. Hurtley, "Eat now," Science 342: 403 (25 October 2013).
Sarah J. Swanson et al, "Barley aleurone cells contain two types of vacuoles: characterization of lytic organelles by use of fluorescent probes," The Plant Cell 10(5): 685–698 (May 1998).
Ginés Morata & Salvador C. Herrera, "Eiger triggers death from afar," eLife 2:e01388 (24 September 2013).
Ainhoa Pérez-Garijo et al, "Apoptotic cells can induce nonautonomous apoptosis through the TNF pathway," eLife 2:e10004 (24 September 2013).
Christopher D. Gregory, "Cell biology: the disassembly of death," Nature 507: 312–313 (20 March 2014).
Ho Larn Tang et al, "Cell survival, DNA damage, and oncogenic transformation after a transient and reversible apoptotic response," Molecular Biology of the Cell 23(12): 2240–2252 (15 June 2012).
Clement T.Y. Chen et al, "Reprogramming of tRNA modifications controls the oxidative stress response by codon-biased translation of proteins," Nature Communications 3(937) (3 July 2012).
The Evolution of Eukaryotes
Tom A. Williams et al, "An archaeal origin of eukaryotes supports only two primary domains of life," Nature 504: 231–236 (12 Decem-ber 2013).
Andrew H. Knoll et al, "Eukaryotic organisms in Proterozoic oceans," Philosophical Transactions of the Royal Society of London, Part B 361 (1470): 1023–1038 (2006).
Philip C. J. Donoghue & Jonathan B. Antcliffe, "Early life: origins of multicellularity," Nature 466: 41–42 (1 July 2010).
Abderrazak El Albani et al, "Large colonial organisms with coordi-nated growth in oxygenated environments 2.1 Gyr ago," Nature 466: 100–104 (1 July 2010).
Christian de Duve, "The birth of complex cells," Scientific American 50–57 (April 1996).
Zhang Wang & Martin Wu, "Phylogenomic reconstruction indicates mitochondrial ancestor was an energy parasite," PLoS One (15 Octo-ber 2014).
Jenna Iacurci, "Mitochondria were parasites before they were powerhouses," Nature World News, (17 October 2014).
Theresia A. Schaedler et al, "A conserved mitochondrial atp-binding cassette transporter exports glutathione polysulfide for cytosolic metal cofactor assembly," The Journal of Biological Chemistry (8 July 2014).
Heather J. Goldsby et al, "Task-switching costs promote the evolution of division of labor and shifts in individuality," PNAS 109(34): 13686–13691 (21 August 2012).
Shinichiro Maruyama & Eunsoo Kim, "A modern descendent of early green algal phagotrophs," Current Biology (23 May 2013).
Bruce A. Curtis et al, "Algal genomes reveal evolutionary mosaicism and the fate of nucleomorphs," Science 492: 59–65 (6 December 2012).
Frederick W. Spiegel, "Contemplating the first plantae," Science 335(6070): 809–810 (17 February 2012).
Camilla Dornfeld et al, "Phylobiochemical characterization of class-Ib aspartate/prephenate aminotransferases reveals evolution of the plant arogenate phenylalanine pathway," The Plant Cell (July 2014).
Cheryl A. Kerfeld et al, "Protein structures forming the shell of primitive bacterial organelles," Science 309 (5736): 936–938 (5 August 2005).
Ishi Nobu, Spokes of the Wheel, Book 2: The Web of Life (1918).
Anna Karnkowska et al, "A eukaryote without a mitochondrial organelle," Current Biology (12 May 2016).
"Change the textbooks: this eukaryote completely lacks mitochon-dria," ScienceDaily (12 May 2016).
Eukaryotic Uplift
John Parnell et al, "Heavy metal, sex and granites: crustal differenti-ation and bioavailability in the mid-Proterozoic," Geology (8 June 2012).
Sid Perkins, "You owe your life to rock," Science (15 June 2012).
Eukaryotic Cell Types
Andrew Koob, The Root of Thought, Pearson Education (2009).
Daniel C. Factor et al, "Epigenomic comparison reveals activation of 'seed' enhancers during transition from naive to primed pluripotency," Cell: Stem Cell 14(6): 854–863 (5 June 2014).
Tushar J. Desai & Mark A. Krasnow, "Stem cells: differentiated cells in a back-up role," Nature 503: 204–205 (14 November 2013).
Purushothama Rao Tata et al, "Dedifferentiation of committed epithelial cells into stem cells in vivo," Nature 503: 218–223 (14 No-vember 2013).
Kyle M. Loh & Bing Lim, "Close encounters with full potential," Nature (19 September 2013).
Extracellular Matrices
Wayne M. Becker et al, The World of the Cell (7th Edition), Benjamin Cummings (2008).
Yu Yao et al, "Glycocalyx modulates the motility and proliferative response of vascular endothelium to fluid shear stress," American Journal of Physiology (1 August 2007).
Nathan Mellor & Anthony Bishopp, "The innermost secretes of root development," Science 345(6197): 622–623 (8 August 2014).
Pontus Nordenfelt et al, "Coordinated integrin activation by actin-dependent force during T-cell migration," Nature Communications (10 October 2016). "How cells move," EurekaAlert! (10 October 2016). "Cells migrate collectively by intermittent bursts of activity," ScienceDaily (29 September 2016). Bert De Rybel et al, "Integration of growth and patterning during vascular tissue formation in Arabidopsis," Science 345(6197): 1255215-1 – 1255215-8 (8 August 2014).
Katsuya Shimabukuro et al, "Reconstitution of amoeboid motility in vitro identifies a motor-independent mechanism for cell body retraction," Current Biology (2011).
Julie Cohen, "Which way is up? Key protein in epithelial cells plays important roles in how cells sense direction," (22 May 2014).
"Cells talk to their neighbors before making a move: comparing notes boosts cells sensing accuracy," ScienceDaily (21 September 2106). David Ellison et al, "Cell–cell communication enhances the capacity of cell ensembles to sense shallow gradients during morphogenesis," PNAS 113(6): E679–E688 (9 February 2016). Andrew Mugler et al, "Limits to the precision of gradient sensing with spatial communication and temporal integration," PNAS 113(6): E689–E695 (9 February 2016).
Push & Shove
"Mechanical forces play major role in regulating cells," ScienceDaily (19 March 2013).
Cho-yin Lee et al, "Actin depolymerization under force is governed by lysine 113:glutamic acid 195-mediated catch-slip bonds," PNAS (4 March 2013).
Teamwork in the Rhizosphere
C.J. Ingham et al, "Mutually facilitated dispersal between the nonmotile fungus Aspergillus fumigatus and the swarming bacterium Paenibacillus vortex," PNAS (2011).
Pilong Li et al, "Phase transitions in the assembly of multivalent signalling proteins," Nature (7 March 2012).
Loïc Le Goff & Thomas Lecuit, "Phase transition in a cell," Science 324(5935): 1654–1655 (26 June 2009).
Ginés Morata & Luna Ballesteros-Arias, "Death to the losers," Science 346(6214): 1181–1182 (5 December 2014).
S.N. Meyer et al, "An ancient defense system eliminates unfit cells from developing tissues during cell competition," Science 346(6214) (5 December 2014).
Anthony A. Hyman & Kai Simons, "Beyond oil and water—phase transitions in cells," Science 337(6098): 1047–1049 (31 August 2012).
David M. Duda et al, "Structure of a glomulin-RBX1-CUL1 complex: inhibition of a RING E3 ligase through masking of its E2-binding surface," Molecular Cell 47(3): 371–382 (28 June 2012).
Nuclear Pore Complexes
Brandon H. Toyama et al, "Identification of long-lived proteins reveals exceptional stability of essential cellular structures," Cell 154(5): 971–982 (29 August 2013).
Cell Division
Claudio Asencio et al, "Coordination of kinase and phosphatase activities by Lem4 enables nuclear envelope reassembly during mitosis," Cell 150(1): 122–135 (6 July 2012).
J. Ranft et al, "Tissue dynamics with permeation," The European Physical Journal E: Soft Matter and Biological Physics 35(6) (2012).
Laia Sadeghi et al, "Centromeric histone H2B monoubiquitination promotes noncoding transcription and chromatin integrity," Nature Structural & Molecular Biology (16 February 2014).
Brian Clegg, "20 amazing facts about the human body," The Observer (26 January 2013).
Lu Gan et al, "Organization of the smallest eukaryotic spindle," Current Biology 21(18):1578–1583 (8 September 2011).
"Cell memory mechanism discovered," (15 August 2013).
Jian Yan et al, "Transcription factor binding in human cells occurs in dense clusters found around cohesion anchor sites," Cell 154(4): 801–813 (15 August 2013).
Richard P. Halley-Stott et al, "Mitosis gives a brief window of opportunity for a change in gene transcription," PLoS Biology 12(7): e1001914 (July 2014).
Adam S. Wilkins & Robin Holliday, "The evolution of meiosis from mitosis," Genetics 181(1): 3–12 (January 2009).
Da-Qiao Ding et al, "Meiosis-specific noncoding RNA mediates robust pairing of homologous chromosomes in meiosis," Science 336(6082): 732–736 (11 May 2012).
"Sperm control DNA break," Nature 497: 497 (16 May 2013).
Sarah E. Yeates et al, "Cryptic choice of conspecific sperm controlled by the impact of ovarian fluid on sperm swimming behavior," Evolution (12 August 2013).
Kirandeep Bhullar et al, "Antibiotic resistance is prevalent in an isolated cave microbiome," PLoS One 7(4): e34953 (11 April 2012).
Piotr Fabrowski et al, "Tubular endocytosis drives remodelling of the apical surface during epithelial morphogenesis in Drosophila," Nature Communications (7 August 2013).
Hilde Abrahamsen & Harald Stenmark, "Growth signaling from inside," Science 334: 611–612 (4 November 2011).
Baljit S. Khakh and Geoffrey Burns, "The double life of ATP," Scientific American 301(6): 84–90 (December 2009).
Rodney Cotterill, The Material World, Cambridge University Press (2008).
Metabolic Pathways
Brenda S.J. Winkel, "Metabolic channeling in plants," Annual Review of Plant Biology 55:87-107 (June 2004).
Camille J. Delebecque et al, "Organization of intracellular reactions with rationally designed RNA assemblies," Science 333(470): 470–474 (22 July 2011).
Cell Intelligence
Emmanuel D. Levy et al, "Signaling through cooperation," Science 328: 983-984 (21 May 2010).
Simon Ausländer & Martin Fussenegger, "Dynamic genome engineering in living cells," Science 346(6211): 813–815 (14 November 2014).
Juan Pablo Muñoz et al, "Mfn2 modulates the UPR and mitochondrial function via repression of PERK," The EMBO Journal 32: 2348–2361 (6 August 2013).
"A protein that can mean life or death for cells," (17 Sep-tember 2013).
Tianzhi Luo et al, "Molecular mechanisms of cellular mechanosens-ing," Nature Materials (20 October 2013).
Yee-Hung M. Chan and Wallace F. Marshall, "How cells know the size of their organelles," Science 337: 1886–1889 (7 September 2012).
Martin A. Schwartz & Christopher S. Chen, "Deconstructing dimen-sionality," Science 339: 402–403 (25 January 2013).
"Cell measures stiffness of its environment using special protein bonds," (12 September 2013).
Li Han et al, "DNA ligase 1 is not essential for mammalian cell viability," Cell Reports 7(2): 316–320 (24 April 2014).
Eric D. Siggia & Massimo Vergassola, "Decisions on the fly in cellular sensory systems," PNAS (9 September 2013).
Swathi Yadlapalli & Yukiko M. Yamashita, "Chromosome-specific nonrandom sister chromatid segregation during stem-cell division," Nature (5 May 2013).
Vuong Tran et al, "Asymmetric division of drosophila male germline stem cell shows asymmetric histone distribution," Science 338: 679–682 (2 November 2012).
Aryeh Warmflash et al, "A method to recapitulate early embryonic spatial patterning in human embryonic stem cells," Nature Methods 11: 847–854 (29 June 2014).
Brian Stallard, "Stem cell specialization is ruled by geometry," Nature World News (1 July 2014).
"Using geometry, researchers coax human embryonic stem cells to organize themselves," Rockefeller University Newswire (30 June 2014).
Mitch Leslie, "How does a cell know its size?," Science 334: 1047–1048 (25 November 2011).
Nicolas Borghi et al, "E-cadherin is under constitutive actomyosin-generated tension that is increased at cell–cell contacts upon exter-nally applied stretch," PNAS (16 July 2013).
Alejandro Sánchez Alvarado, "Developmental biology: A cellular view of regeneration," Nature 460: 39–40 (2 July 2009).
Martin Kragl et al, "Cells keep a memory of their tissue origin during axolotl limb regeneration," Nature 460: 60–65 (2 July 2009).
P. Barry, "Extreme healing," Science News 172: 276 (3 November 2007).
Maring Krag et al, "Cells keep a memory of their tissue origin during axolotl limb regeneration," Nature 460: 60–65 (2 July 2009).
Lucas Laursen, "Salamander cells remember their origins in limb regeneration," Nature (1 July 2009).
Tina Hesman Saey, "Salamanders don't regrow limbs from scratch," Science News (1 July 2009).
"Study finds how bacteria inactivate immune defenses," (15 November 2012).
A. Marijke Keestra et al, "Manipulation of small Rho GTPases is a pathogen-induced process detected by NOD1," Nature 496: 233–237 (11 April 2013).
Alyssa Botelho, "Breast cancer impersonates neurons to invade the brain," New Scientist (6 January 2014).
Josh Neman et al, "Human breast cancer metastases to the brain display GABAergic properties in the neural niche," PNAS (14 Janu-ary 2014).
Gary A. Clawson, "Fusion for moving," Science 342: 699–700 (8 November 2013).
Rossitza Lazova et al, "A melanoma brain metastasis with a donor-patient hybrid genome following bone marrow transplantation: first evidence for fusion in human cancer," PLoS One (26 June 2013).
Cell Movement
Thomas P. Stossel, "The machinery of cell crawling," Scientific American 54–63 (September 1994).
Carl Zimmer, "New technologies allow scientists to watch cells in motion," The New York Times (9 June 2009).
Markus Basan et al, "Alignment of cellular motility forces with tissue flow as a mechanism for efficient wound healing," PNAS (23 January 2013).
"How cells know which way to go," ScienceDaily (27 October 2014).
Ming-Jie Wang et al, "The directional response of chemotactic cells depends on a balance between cytoskeletal architecture and the ex-ternal gradient," Cell Reports 9(3): 1110–1121 (6 November 2014).
Ming Tang et al, "Evolutionarily conserved coupling of adaptive and excitable networks mediates eukaryotic chemotaxis," Nature Communications (27 October 2014).
Xavier Serra-Picamal et al, " Mechanical waves during tissue expansion," Nature Physics 8: 628–634 (8 July 2012).
Gretchen Vogel, "Cells rewrite their own destiny, "Science 330: 1678 (17 December 2010).
Miguel Perz-Aso et al, "Pharmacological blockade of adenosine A2A receptors diminishes scarring," The FASEB Journal (5 July 2012).
Ray Keller, "Physical biology returns to morphogenesis," Science 338: 201-202 (12 October 2012).

Deciphering DNA
J.D. Watson & F.H.C. Crick, "Molecular structure of nucleic acids: a structure for deoxyribose nucleic acid," Nature 171: 737–738 (25 April 1953).
Paul Strathern, The Big Idea: Crick, Watson, and DNA, First Anchor Books (1997).
Sam Kean, The Disappearing Spoon, Little, Brown and Company (2010).
Mario Livio, Brilliant Blunders, Simon & Schuster (2014).
Kenneth Douglas, DNA Nanoscience: From Prebiotic Origins to Emerging Nanotechnology, CRC Press (2017).
Unlettered Nucleobases
Yasuhiro Doi et al, "Artificial DNA made exclusively of nonnatural c-nucleosides with four types of nonnatural bases," Journal of the American Chemical Society 130(27): 8762–8768 (11 June 2008).
Karin Betz et al, "KlenTaq polymerase replicates unnatural base pairs by inducing a Watson-Crick geometry," Nature Chemical Biology 8: 612–614 (3 June 2012).
Erez Liberman-Aiden et al, "Comprehensive mapping of long-range interactions reveals folding principles of the human genome," Science 326(5950): 289–293 (9 October 2009).
Christophe Redon et al, "Histone H2A variants H2AX and H2AZ," Current Opinion in Genetics & Development 12(2): 162–169 (1 April 2002).
Suhas S.P. Rao et al, "A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping," Cell 159(7): 1665–1680 (18 December 2014).
Tina Hesman Saey, "The art of DNA folding," Science News (29 December 2014).
Robert E. Thurman et al, "The accessible chromatin landscape of the human genome," Nature 489: 75–82 (6 September 2012).
Laura Sanders, "New view of genome reveals how cell packs DNA neatly into place," Science News 176(10): 14 (7 November 2009).
Charles Q. Choi, "Double-helix double up," Scientific American 298(4): 30 (April 2008).
Recognizing Foreign DNA
Seamus R. Morrone et al, "Cooperative assembly of IFI16 filaments on dsDNA provides insights into host defense strategy," PNAS 111(1): E62–E71 (7 January 2014).
Kirsten L. Frieda & Steven M. Block, "Direct observation of cotran-scriptional folding in an adenine riboswitch," Science 338: 397–400 (19 October 2012).
DNA Knots
"DNA in knots," Science 277(5326) (1 August 1997).
Philip Ball, "DNA: Celebrate the unknowns," Nature 496: 419–420 (25 April 2013).
"Location matters, even for genes," ScienceDaily (15 Feburary 2008).
Michael Hempsey, "A new direction for gene loops," Science 338: 624–625 (2 November 2012).
Sue Mei Tan-Wong et al, "Gene loops enhance transcriptional directionality," Science 338: 671–675 (2 November 2012).
Tom Misteli, "The inner life of the genome," Scientific American 304(2): 66–73 (February 2011).
L.J. Stadler, "The gene," Science 120(3125): 811–819 (19 November 1954).
Natalia N. Ivanova et al, "Stop codon reassignments in the wild," Science 344(6186): 909–913 (23 May 2014).
Genetic Coding
M. J. Lajoie et al, "Probing the limits of genetic recoding in essential genes," Science 342(6156): 361–363 (18 October 2013).
John F. Atkins & Pavel V. Baranov, "The distinction between recoding and codon reassignment," GSA Genetics 185(4): 1535–1536 (August 2010).
Erika Check Hayen, "Microbes defy rules of DNA code," Nature (22 May 2014).
Prokaryotic Adaptive Immunity
Rodolphe Barrangou et al, "CRISPR provides acquired resistance against viruses in prokaryotes," Science 315(5819): 1709-1712 (23 March 2007).
Carl Zimmer, "Breakthrough DNA editor born of bacteria," Quanta Magazine (6 February 2015).
Rosie Mestel, "CRISPR had a life before it became a gene-editing tool," Science News (5 April 2017).
Asaf Levy et al, "CRISPR adaptation biases explain preference for acquisition of foreign DNA," Nature (13 April 2015).
Heidi Ledford, "CRISPR: gene editing is just the beginning," Nature (7 March 2016).
Joseph Bondy-Denomy et al, "Multiple mechanisms for CRISPR–Cas inhibition by anti-CRISPR proteins," Nature (23 September 2015).
Kimberley D. Seed et al, "A bacteriophage encodes its own CRISPR/Cas adaptive response to evade host innate immunity," Nature (27 February 2013).
Prarthana Mohanraju et al, "Diverse evolutionary roots and mechanistic variations of the CRISPR-Cas systems," Science 353(6299) (5 August 2016).
Barbara McClintock, "The significance of responses of the genome to challenge," Nobel lecture (8 December 1983).
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Codons & Cistrons
Benjamin Lewis, Genes IX, Jones & Bartlett Learning (2007).
Genetic Variations
Eléonore Durand et al, "Dominance hierarchy arising from the evolution of a complex small RNA regulatory network," Science 346(6214) 1200–1205 (5 December 2014).
S.P. Yip, "Sequence variation at the human ABO locus," Annals of Human Genetics 66 (1): 1–27 (January 2002).
Margret R. Hoehe et al, "Multiple haplotype-resolved genomes reveal population patterns of gene and protein diplotypes," Nature Communications (26 November 2014).
Gregor Mendel
Susan J. Lolle et al, "Genome-wide non-mendelian inheritance of extra-genomic information in Arabidopsis," Nature 434: 505–509 (24 March 2005).
Rebecca Cheung, "Death hour may depend on DNA," Science News 181(12): 14 (16 June 2012).
Christopher Vollmers et al, "Circadian oscillations of protein-coding and regulatory RNAs in a highly dynamic mammalian liver epigenome," Cell Metabolism 6(6): 833–845 (5 December 2012).
Guillaume Rey & Akhilesh B. Reddy, "Rhythmic respiration," Science 342: 570–571 (1 November 2013).
Clara Bien Peek et al, "Circadian clock NAD+ cycle drives mitochondrial oxidative metabolism in mice," Science (19 September 2013).
Expression & Regulation
Gordon M. Tomkins et al, "Control of specific gene expression in higher organisms," Science 166(3912): 1474–1480 (19 December 1969).
Stephanie Fanucchi et al, "Chromosomal contact permits transcription between coregulated genes," Cell 155: 606–620 (October 24, 2013).
"'Kissing genes' breakthrough," (14 November 2013).
"Unique solution to gene regulation," ScienceDaily (21 August 2012).
Gina Bari Kolata, "Molecular probes: a new way to study gene expression," Science 183(4120): 63–64 (11 January 1974).
Robert F. Goldberger, "Autogenous regulation of gene expression," Science 183(4127): 810–816 (1 March 1974).
Sea Lampreys
Jeramiah J Smith et al, "Sequencing of the sea lamprey (Petromyzon marinus) genome provides insights into vertebrate evolution," Nature Genetics (24 February 2013).
S. Kuratani et al, "Embryology of the lamprey and evolution of the vertebrate jaw: insights from molecular and developmental perspectives," Philosophical Transactions of the Royal Society B 356(1414): 1615–1632 (29 October 2001).
Gautham Nair & Arjun Raj, "Time-lapse transcription," Science 332(6028): 431–432 (22 April 2011).
Robert A. Forties et al, "Transcription: on the move," eLife 2: e01414 (24 September 2013).
John S. Mattick, "The hidden genetic program of complex organisms," Scientific American 291(4): 60–67 (June 2005).
Erika Check Hayden, "Evidence of altered RNA stirs debate," Nature 473: 432 (26 May 2011).
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Leonardo Salmena et al, "A ceRNA hypothesis: the Rosetta stone of the hidden RNA language?," Cell 146: 353–358 (5 August 2011).
Robert J. Weatheritt & M. Madan Babu, "The hidden codes that shape protein evolution," Science 342(6164): 1325–1326 (13 Decem-ber 2013).
Mingyao Li et al, "Widespread RNA and DNA sequence differences in the human transcriptome," Science 333: 53–58 (1 July 2011).
Tina Hesman Saey, "Central dogma thrown off-kilter," Science News 178(12): 17 (4 December 2010).
J.R. Minkel, "RNA to the rescue," Scientific American 292(6): 20–21 (June 2005).
Dominic Schmidt, "Evolution of vertebrate transcriptional regulator binding," Science 342(6163): 1186 (6 December 2013).
X. Roca et al, "Widespread recognition of 5' splice sites by noncanoni-cal base-pairing to U1 snRNA involving bulged nucleotides," Genes & Development 26 (10): 1098–1109 (15 May 2012).
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Michael Ibba & Dieter Söll, "Quality control mechanisms during translation," Science 286(5446): 1893–1897 (3 December 1999).
Albert Tsai et al, "Heterogeneous pathways and timing of factor departure during translation initiation," Nature (17 June 2012).
Noa Liscovitch-Brauer et al, "Trade-off between transcriptome plasticity and genome evolution in cephalopods," Cell 169(2): 191-202 (6 April 2017).
"'Smart' cephalopods trade off genome evolution for prolific RNA editing," EurekAlert! (6 April 2017).
Tina Hesman Saey, "Cephalopod smarts tied to RNA edits," Science News (29 April 2017).
Quality Control
Simone C Rufener & Oliver Mühlemann, "eIF4E-bound mRNPs are substrates for nonsense-mediated mRNA decay in mammalian cells," Nature Structural & Molecular Biology (12 May 2013).
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Yoshitaka Matsuo et al, "Coupled GTPase and remodelling ATPase activities form a checkpoint for ribosome export," Nature (17 Novem-ber 2013).
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Michael A. Lodato et al, "Somatic mutation in single human neurons tracks developmental and transcriptional history," Science 350(6256): 94–98 (2 October 2015).
Laura Sanders, "Brain cells’ DNA differs," Science News (1 October 2015).
Tina Hesman Saey, "Tunicate genome found out of order," Science News 178(13): 13 (18 December 2010).
France Denoeud et al, "Plasticity of animal genome architecture unmasked by rapid evolution of a pelagic tunicate," Science 330(6009): 1381–1385 (3 December 2010).
Andreas D. Zimmer et al, "Reannotation and extended community resources for the genome of the non-seed plant Physcomitrella patens provide insights into the evolution of plant gene structures and func-tions," BMC Genomics (23 July 2013).
P. Carninci & Y. Hayashizaki, "Noncoding RNA transcription beyond annotated genes," Current Opinion in Genetics & Development 17 (2): 139–144 (April 2007).
The Tomato Genome Consortium, "The tomato genome sequence provides insights into fleshy fruit evolution," Nature 485: 635–641 (31 May 2012).
Nicholas Wade, "More genes than humans: the tomato decoded," The New York Times (30 May 2012).
"Recreating the history of life through the genome," ScienceDaily (19 November 2013).
David Juan et al, "Late-replicating CNVs as a source of new genes," Biology Open (15 November 2013).
James R. Lupski, "Genome mosaicism – one human, multiple genomes," Science 341: 358–359 (26 July 2013).
Joseph Panno, The Cell, Facts on File (2005).
Stephen J. Giovannoni et al, "Genome streamlining in a cosmopolitan oceanic bacterium," Science 309(5738): 1242–1245 (19 August 2005).
Genetic Exchange
Stuart B. Levy, "The challenge of antibiotic resistance," Scientific American 278(3): 46–53 (March 1998).
Chris S. Smillie et al, "Ecology drives a global network of gene exchange connecting the human microbiome," Nature 480: 241 – 244 (8 December 2011).
Gina Kolata "In good health? thank your 100 trillion bacteria," The New York Times (13 June 2012).
The Human Microbiome Project Consortium, "Structure, function and diversity of the healthy human microbiome," Nature 486: 207–214 (14 June 2012).
Tanya Yatsunenko et al, "Human gut microbiome viewed across age and geography," Nature 486: 222–227 (14 June 2012).
"Eduardo P.C. Rocha, "With a little help from prokaryotes," Science 339: 1154–1155 (8 March 2013).
Gerard Schönknecht et al, "Gene transfer from bacteria and archaea facilitated evolution of an extremophilic eukaryote," Science 339: 1207–1210 (8 March 2013).
S. Stegemann et al, "Horizontal transfer of chloroplast genomes between plant species," PNAS (30 January 2012).
Zhenxiang Xi et al, "Horizontal transfer of expressed genes in a parasitic flowering plant," BMC Genomics 13: 227 (8 June 2012).
Joe Dekker, "Gene regulation in the third dimension," Science 319: 1793–1794 (28 March 2008).
Erez Lieberman-Aiden et al, " Comprehensive mapping of long-range interactions reveals folding principles of the human genome," Science 326 (5950): 289–293 (9 October 2009).
Joan-Ramon Daban, "The energy components of stacked chromatin layers explain the morphology, dimensions and mechanical properties of metaphase chromosomes," Interface (8 January 2014).
Preetha Anand et al, "A novel role for lipid droplets in the organismal antibacterial response," eLife 1:e00003 (13 November 2012).
Elphège P. Nora et al, "Spatial partitioning of the regulatory land-scape of the X-inactivation centre," Nature (11 April 2012).
Jim Fessenden, "Chromosomes organize into 'yarns': may explain why DNA mutations can affect genes located thousands of base pairs away," ScienceDaily (11 April 2012).
"Critical pathway in cell cycle may lead to cancer development," Salk Institute News Release (11 July 2013).
Anthony J. Cesare et al, "The telomere deprotection response is functionally distinct from the genomic DNA damage response," Molecular Cell 51(2): 141–155 (11 July 2013).
Julian L. Huppert & Shankar Balasubramanian, "Prevalence of quadruplexes in the human genome," Nucleic Acids Research 33(9:) 2908–2916 (September 2005).
Tomas Simonsson, "G-Quadruplex DNA structures variations on a theme," Biological Chemistry 382(4): 621–628 (June 2005).
Giulia Biffi et al, "Quantitative visualization of DNA G-quadruplex structures in human cells," Nature Chemistry (20 January 2013).
Comparative Chromosomes
Ann Gibbons, "Bonobos join chimps as closest human relatives," Science (13 June 2012).
Katherine S. Pollard, "What makes us human?," Scientific American 300(5): 44-49 (May 2009).
Kay Prüfer et al, "The bonobo genome compared with the chimpanzee and human genomes," Nature (13 June 2012).
Cory Y. McLean et al, "Human-specific loss of regulatory DNA and the evolution of human-specific traits," Nature 471: 216–219 (10 March 2011).
DNA Content
Nessa Carey, The Epigenetics Revolution, Columbia University Press (2012).
Greg Elgar & Tanya Vavouri, "Tuning in to the signals: noncoding sequence conservation in vertebrate genomes," Trends in Genetics 24(7): 344–352 (July 2008).
Ewen Callaway, "Human brain shaped by duplicate genes," Nature (3 May 2012).
Michael T. Madigan et al, Biology of Microorganisms, Pearson Education (2009).
Enrique Ibarra-Laclette et al, "Architecture and evolution of a minute plant genome," Nature (12 May 2013).
Replication Accuracy
Evan Z. Macosko &, Steven A. McCarroll, "Our fallen genomes," Science 342(6158): 564–565 (1 November 2013).
Michael J. McConnell et al, "Mosaic copy number variation in human neurons," Science 342(6158): 632–637 (1 November 2013).
Sex Chromosomes
Carl Zimmer, "Seeing X chromosomes in a new light," The New York Times (20 January 2014).
Natalie Angier, "For motherly X chromosome, gender is only the beginning," The New York Times (1 May 2007).
Richard Harris, "Scientists decipher Y chromosome," NPR (19 June 2003).
Jae Bok Heo & Sibum Sung, "Vernalization-mediated epigenetic silencing by a long intronic noncoding RNA," Science 331(6013): 76–79 (7 January 2011).
Gary Stix, "Geographer of the male genome," Scientific American 291(6): 40–41 (December 2004).
Jacob L Mueller et al, "Independent specialization of the human and mouse X chromosomes for the male germ line," Nature Genetics (21 July 2013).
Genetic Complexity
William E. Friedman, "One genome, two ontogenies," Science 339(6123): 1045–1046 (1 March 2013).
Keiko Sakakibara et al, "KNOX2 genes regulate the haploid-to-diploid morphological transition in land plants," Science 339(6123): 1067–1070 (1 March 2013).
Jane Qiu, "Epigenetics: unfinished symphony," Nature 441: 143–145 (11 May 2006).
Trever R. Covert, "The history of epigenetics explored," Epigenetics News (15 April 2006).
Gary Felsenfeld, "A brief history of epigenetics," Cold Spring Harbor Perspectives in Biology (2014).
Nina V. Fedoroff, "Transposable elements, epigenetics, and genome evolution," Science 338: 758–767 (9 November 2012).
Oded Rechavisend et al, "Transgenerational inheritance of an acquired small RNA-based antiviral response in C. elegans," Cell, 147(6): 1248–1256 (23 November 2011).
Douglas L. Chalker, "Epigenetics: keeping one's sex," Nature 509: 430–431 (22 May 2014).
Deepankar Pratap Singh et al, "Genome-defence small RNAs exapted for epigenetic mating-type inheritance," Nature 509: 447–452 (22 May 2014).
Vincenzo Pirrotta, "How to read chromatin past," Science 337: 919–920 (24 August 2012).
Helena Kilpinen et al, "Coordinated effects of sequence variation on DNA binding, chromatin structure, and transcription," Science 342: 744–747 (8 November 2013).
"Rethinking the genetic code," ScienceDaily (11 August 2013).
Thomas M. Norman et al, "Memory and modularity in cell-fate decision making," Nature 503: 481–486 (28 November 2013).
Mark Ptashne, "Epigenetics: core misconcept," PNAS 110(18): 7101–7103 (30 April 2013).
André Fischer, "Epigenetic memory: the Lamarckian brain," The EMBO Journal 33(7): 665–779 (1 April 2014).
"Gene expression changes with meditation," ScienceDaily (8 December 2013).
Eric J. Nestler, "Epigenetics: stress makes its molecular mark," Nature 490: 171–172 (11 October 2012).
W.W. Pace et al, "Effect of compassion meditation on neuroendocrine, innate immune and behavioral responses to psychosocial stress," Psychoneuroendocrinology 34(1): 87–98 (January 2009).
Christopher R.K. MacLean et al, "Effects of the transcendental meditation program on adaptive mechanisms: changes in hormone levels and responses to stress after 4 months of practice," Psychoneu-roendocrinology 22(4): 277–295 (May 1997).
Linda Geddes, "Fear of a smell can be passed down several genera-tions," New Scientist (1 December 2013).
Alex Eccleston et al, "Epigenetics," Nature 447: 395 (24 May 2007).
Mirko Francesconi & Ben Lehner, "The effects of genetic variation on gene expression dynamics during development," Nature 505: 208–211 (9 January 2014).
Alejandro Lomniczi et al, "Epigenetic control of female puberty," Nature Neuroscience (27 January 2013).
Tina Hesman Saey, "DNA packaging runs in families," Science News 174(2): 9 (19 July 2009).
"Genetics has a role in determining sexual orientation in men, further evidence," ScienceDaily (8 November 2007).
Elizabeth Norton, "Homosexuality may start in the womb," Science (11 December 2012).
Tina Hesman Saey, "DNA tags differ in gay, straight men," Science News (14 November 2015).
William R. Rice et al, "Homosexuality as a consequence of epigenetically canalized sexual development," The Quarterly Review of Biology 84(4) (December 2012).
"Epigenetics may be a critical factor contributing to homosexuality, study suggests," ScienceDaily (11 December 2012).
Jonathan Weitzman, "Beyond face value," Nature 477: 534–535 (29 September 2011).
L. Duncan Bulkley, Cancer, Its Cause and Treatment, Paul B. Hoeber (1915).
María Berdasco et al, "DNA methylation plasticity of human adipose-derived stem cells in lineage commitment," The American Journal of Pathology 181(6): 20790–20793 (December 2012).
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Paolo Sassone-Corsi, "When metabolism and epigenetics converge," Science 339(6116): 148–150 (11 January 2013).
Guilhem Chalancon et al, "Reconfiguring regulation," Science 335: 1050–1051 (2 March 2012).
Pierre Nicolas et al, "Condition-dependent transcriptome reveals high-level regulatory architecture in Bacillus subtilis," Science 335: 1103–1106 (2 March 2012).
"New role for RNAi discovered: epigenetic memory may pass RNA silencing from one generation to the next," ScienceDaily (26 June 2012).
Masaki Shirayama et al, piRNAs initiate an epigenetic memory of nonself RNA in the C. elegans germline," Cell (25 June 2012).
Anne-Ruxandra Carvunis et al, "Proto-genes and de novo gene birth," Nature 487: 370–373 (19 July 2012).
Oded Rechavi et al, "Starvation-induced transgenerational inher-itance of small rnas in C. elegans," Cell 158(2): 277–287 (17 July 2014).
Eric J. Nestler, "Hidden switches in the mind," Scientific American 305(6): 77–83 (December 2011).
Elise B. Robinson et al, "Genetic risk for autism spectrum disorders and neuropsychiatric variation in the general population," Nature Genetics (21 March 2016).
"Autism genes are in all of us, new research reveals," ScienceDaily (21 March 2016).
Richard C. Francis, Epigenetics, 17, W.W. Norton & Company (2011).
Ulrike C Lange & Robert Schneider, "What an epigenome remem-bers," BioEssays 32(8) (2010).
Minoo Rassoulzadegan et al, "RNA-mediated non-mendelian inheritance of an epigenetic change in the mouse," Nature 441: 469–474 (25 May 2006).
Genetic Evolution
Federico Gaiti et al, "Landscape of histone modifications in a sponge reveals the origin of animal cis-regulatory complexity," eLife (11 April 2017).
"Humans and sponges share gene regulation," ScienceDaily (11 April 2017).
Junk Debunked
Susumu Ohno, "So much "junk" DNA in our genome," in Evolution of Genetic Systems, edited by H.H. Smith, Gordon and Breach (1972).
Tim Hunt, "How mammals get the message," New Scientist (18 May 1972).
Dan Graur, "The origin of junk DNA: a historical whodunnit," Judge Starling weblog (19 October 2013).
Tina Hesman Saey, "Genome may be full of junk after all," Science News 17 178(12): (4 December 2010).
Matthew J. Hangauer et al, "Pervasive transcription of the human genome produces thousands of previously unidentified long intergenic noncoding RNAs," PLoS Genetics (20 June 2013).
Karen Adelman & Emily Egan, "Non-coding RNA: More uses for genomic junk," Nature 543: 183-185(8 March 2017). Chris M. Rands et al, "8.2% of the human genome is constrained: variation in rates of turnover across functional element classes in the human lineage," PLoS Genetics (24 July 2014).
Bryan J. Venters & B. Franklin Pugh, "Genomic organization of human transcription initiation complexes," Nature (18 September 2013).
Alexander D. Ramos et al, "Integration of genome-wide approaches identifies lncRNAs of adult neural stem cells and their progeny in vivo," Cell: Stem Cell 12(5): 616-628 (11 April 2013).
Justin J.L. Wong et al, "Orchestrated intron retention regulates normal granulocyte differentiation," Cell 154(3): 583–595 (1 August 2013).
"Long noncoding RNAs may alter chromosome's structure," Science 340: 910 (24 May 2013).
Jeremy E. Wilusz and Phillip A. Sharp, "A circuitous route to noncoding RNA," Science 340: 440–441 (26 April 2013).
Shane Neph et al, "An expansive human regulatory lexicon encoded in transcription factor footprints," Nature 489: 83–90 (6 September 2012).
Colin Barras, "Your face may have been sculpted by junk DNA," New Scientist (24 October 2013).
Gina Kolata, "Bits of mystery DNA, far from 'junk,' play crucial role," The New York Times (5 September 2012).
Terrence S. Furey & Praveen Sethupathy, "Genetics driving epigenet-ics," Science 342: 705–706 (8 November 2013).
Mark Ptashne, "On the use of the word 'epigenetic'," Current Biology 17(3): R233–R236 (3 April 2007).
"Some long non-coding RNAs are conventional after all," (4 April 2014).
Ariel A Bazzini et al, "Identification of small ORFs in vertebrates using ribosome footprinting and evolutionary conservation," The EMBO Journal 33(7): 665–779 (1 April 2014).
Mathias Wilhelm et al, "Mass-spectrometry-based draft of the human proteome," Nature 509: 582–587 (29 May 2014).
"Extensive cataloging of human proteins uncovers 193 never known to exist," ScienceDaily (28 May 2014).
Jeffrey M. Perkel, "Visiting 'noncordarnia'," BioTechniques 54(6): 301–304 (June 2013).
Heidi Ledford, "Circular RNAs throw genetics for a loop," Nature 494: 415 (28 February 2013).
Sebastian Memczak et al, "Circular RNAs are a large class of animal RNAs with regulatory potency," Nature 495: 333–338 (21 March 2013).
Delphine Quénet & Yamini Dalal "A long non-coding RNA is required for targeting centromeric protein A to the human centromere," eLife (12 August 2014).
The ENCODE Project Consortium, "An integrated encyclopedia of DNA elements in the human genome," Nature 489: 57–74 (6 Sep-tember 2012).
Laura M. Zahn, "Tagging new genes," Science 340(6135) (24 May 2013).
V.K. Rakyan et al, "Transgenerational inheritance of epigenetic states at the murine Axin(Fu) allele occurs after maternal and paternal transmission," PNAS 100 (5): 2538–2543 (2003).
Alexander Hunziker et al, "Genetic flexibility of regulatory networks," PNAS 107(29): 12998–13003 (20 July 2010).
Hannah K. Long et al, "Epigenetic conservation at gene regulatory elements revealed by non-methylated DNA profiling in seven vertebrates," eLife 2:e00348 (26 Feburary 2013).
Maria Gutierrez-Arcelus et al, "Passive and active DNA methylation and the interplay with genetic variation in gene regulation," eLife 2:e00523 (4 June 2013).
Sylvain Guiber & Michael Weber, "Epigenetics: erase for a new start," Nature 492: 363–364 (20 December 2012).
"Human-chimp evolutionary divergence: methylation and gene sequence co-evolved, study suggests," ScienceDaily (15 September 2011).
Michael Balter, "Aging is recorded in our genes," Science (11 June 2012).
Tasnim Dayeh et al, " Genome-wide DNA methylation analysis of human pancreatic islets from type 2 diabetic and non-diabetic donors identifies candidate genes that influence insulin secretion," PLoS Genetics (6 March 2014).
Catherine Bui et al, "cAMP response element-binding (CREB) recruitment following a specific CpG demethylation leads to the elevated expression of the matrix metalloproteinase 13 in human artic-ular chondrocytes and osteoarthritis," The FASEB Jounal (13 April 2012).
Ana M.M. Oliveira et al, "Rescue of aging-associated decline in Dnmt3a2 expression restores cognitive abilities," Nature Neuroscience (1 July 2012).
Christopher S. Nabel & Rahul M. Kohli, "Demystifying DNA demeth-ylation," Science 333: 1229–1230 (2 September 2011).
Weiqiang Qian et al, "A histone acetyltransferase regulates active DNA demethylation in Arabidopsis," Science 336(6087): 1445–1448 (15 June 2012).
Yannick Jacob & Rob Martienssen, "All packed up and ready to go," Science 336(6087): 1391–1392 (15 June 2012).
Breeding Urges
Tyler J. Stevenson & Brian J. Prendergast, "Reversible DNA methyl-ation regulates seasonal photoperiodic time measurement," PNAS 110(41): 16651–16656 (8 October 2013).
Honeybee Memories
Mark J. Dickman et al, "Extensive histone post-translational modification in honey bees," Insect Biochemistry and Molecular Biology 43(2): 125–137 (February 2013).
"New components of epigenetic 'code' for honey bee development discovered," ScienceDaily (11 December 2012).
R. Kucharski et al, "Nutritional control of reproductive status in honeybees via DNA methylation," Science 319(5871): 1827–1830 (28 March 2008).
"Epigenetics: what makes a queen bee?," Nature 468: 348 (18 November 2010).
Honeybee Genome Sequencing Consortium, "Symbiosis insights through metagenomic analysis of a microbial consortium," Nature 443: 950–955 (26 October 2006).
Yin Wang et al, "Functional CpG methylation system in a social insect," Science 314(5799): 645–647 (27 October 2006).
Erika Check, "From hive minds to humans," Nature 443: 893 (26 October 2006).
Edward O. Wilson, "Genomics: how to make a social insect," Nature 443: 919–920 (26 October 2006).
Brendan G. Hunt et al, "Functional conservation of DNA methylation in the pea aphid and the honeybee," Genome Biology and Evolution 2: 719–728 (2010).
Jeremy J. Day et al, "DNA methylation regulates associative reward learning," Nature Neuroscience (25 August 2013).
Seeds & Embryos
Xu Wang et al, "Paternally expressed genes predominate in the placenta," PNAS 110(26): 10705–10710 (25 June 2013).
Methylation Variation
Nessa Carey, The Epigenetics Revolution, Columbia University Press (2012).
Ryan Lister et al, "Global epigenomic reconfiguration during mamma-lian brain development," Sciencexpress (5 July 2013).
Graham McVicker et al, "Identification of genetic variants that affect histone modifications in human cells," Science 342(6159): 747–749 (8 November 2013).
Histone Alteration
Ana Raquel Pengelly et al, "A histone mutant reproduces the pheno-type caused by loss of histone-modifying factor polycomb," Science 339: 698–699 (8 February 2013).
"Control of gene expression: histone occupancy in your genome," ScienceDaily (30 April 2012).
Jung-Shin Lee et al, " Codependency of H2B monoubiquitination and nucleosome reassembly on Chd1," Genes and Development 26: 914-919 (1 May 2012).
"Histone modification controls development: chemical tags on histones regulate gene activity," ScienceDaily (8 February 2013).
Rite of Spring
Ayaz Ahmad et al, "Decoding the epigenetic language of plant development," Molecular Plant 3(4): 719–728 (May 2010).
Sibum Sung & Richard M. Amasino, "Vernalization in Arabidopsis thaliana is mediated by the PHD finger protein VIN3," Nature 427: 159–164 (8 January 2004).
Stéphane Pien et al, "ARABIDOPSIS TRITHORAX1 dynamically regulates FLOWERING LOCUS C activation via histone 3 lysine 4 trimethylation," The Plant Cell 20: 580–588 (March 2008).
Filomena De Lucia et al, "A PHD-polycomb repressive complex 2 triggers the epigenetic silencing of FLC during vernalization," PNAS 105(44): 16831–16836 (4 November 2008).
Jae Bok Heo & Sibum Sung, "Vernalization-mediated epigenetic silencing by a long intronic noncoding RNA," Science 331(6013): 76–79 (7 January 2011).
RNA Regulation
Jeannie T. Lee, "Epigenetic regulation by long noncoding RNAs," Science 338(6113): 1435–1439 (14 December 2012).
Nicole T. Schirle & Ian J. MacRae, "The crystal structure of human Argonaute2," Science 336 (6084): 1037–1040 (25 May 2012).
"RNA's secret language," Nature 476: 375 (25 August 2011).
Nikolaus Rajewsky, "microRNA target predictions in animals," Nature Genetics (30 May 2006).
Azra Krek et al, "Combinatorial microRNA target predictions," Nature Genetics (3 April 2005).
"A micro-RNA as a key regulator of learning and Alzheimer's disease," ScienceDaily (23 September 2011).
Saad Arif et al, " Evolution of mir-92a underlies natural morphologi-cal variation in Drosophila melanogaster," Current Biology 23(6): 523-526 (28 February 2013).
Linda Geddes, "Fear of a smell can be passed down several genera-tions," New Scientist (1 December 2013).
Andy Coghlan, "Are RNA fragments making gene tweaks in descend-ants?," New Scientist (13 April 2014).
Tina Hesman Saey, "Cancer's little helpers," Science News 178(5): 18–21 (8 August 2010).
X Inactivation
"Xistential crisis: discovery shows there's more to the story in silencing X chromosomes," ScienceDaily (8 January 2016).
Srimonta Gayen et al, "Sex-specific silencing of X-linked genes by Xist RNA," PNAS (6 January 2016).
Andrew Dimond & Peter Fraser, "Long noncoding RNAs Xist in three dimensions," Science 341: 720–721 (16 August 2013).
Jesse M. Engreitz et al, "The Xist lncRNA exploits three- dimensional genome architecture to spread across the X chromosome," Science 341: 1237973-1–1237973-8 (16 August 2013).
Graeme D. Penny et al, "Requirement for Xist in X chromosome activation," Nature 379: 131–137 (11 January 1996).
Caroline M. Ogilvie & Paul N. Scriven, "Meiotic outcomes in recipro-cal translocation carriers ascertained in 3-day human embryos," European Journal of Human Genetics (European Society of Human Genetics) 10 (12): 801–806 (December 2002).
Marsupial X Inactivation
J.E. Deakin et al, "Unravelling the evolutionary origins of X chromo-some inactivation in mammals: insights from marsupials and mono-tremes," Chromosome Research 17 (5); 671–685 (2009).
J.A. Erwin and J.T. Lee, "New twists in X-chromosome inactivation," Current Opinion in Cell Biology 20(3): 349–355 (2008).
Donald M. Crothers, "Fine tuning gene regulation," Science 339: 766–767 (15 February 2013).
Sangjin Kim et al, "Probing allostery through DNA," Science 339: 816–819 (15 February 2013).
Hesam N. Motlagh et al, "The ensemble nature of allostery," Nature 508: 331–339 (17 April 2014).
Vera van Noort et al, "Cross-talk between phosphorylation and lysine acetylation in a genome-reduced bacterium," Molecular Systems Biology 8:571 (28 February 2012).
Petter Hammar et al, "The lac Repressor Displays Facilitated Diffusion in Living Cells," Science 336(6088): 1595–1598 (22 June 2012).
"Protein crawls on chromosome," Nature 486: 443 (28 June 2012).
Wood Work
Quanzi Lia et al, "Splice variant of the SND1 transcription factor is a dominant negative of SND1 members and their regulation in Popu-lus trichocarpa," PNAS 109(36): 4699–14704 (4 September 2012).
Lifestyle Epigenetics
Jorge Alejandro Alegría-Torres et al, "Epigenetics and lifestyle," Epigenomics 3(3): 267–277 (June 2011).
"Poisoned inheritance," The Economist (14 December 2013).
Melissa Lee Phillips, "Bearing sons can alter your mind," Science (26 September 2012).
H.E. Ross & L.J. Young, "Oxytocin and the neural mechanisms regulating social cognition and affiliative behavior," Front Neuroendocrinol 30(4): 534–547 (2009).
Dong Liu et al, "Maternal care, hippocampal glucocorticoid receptors, and hypothalamic-pituitary-adrenal responses to stress," Science 1659–1662 (12 September 1997).
Darlene Francis et al, "Nongenomic transmission across generations of maternal behavior and stress responses in the rat," Science 1155–1158 (5 November 1999).
Julie B. Herbstman et al, "Predictors and consequences of global DNA methylation in cord blood and at three years," PLoS One (4 September 2013).
F.A. Champagne & M.J. Meaney, "Like mother, like daughter: evidence for non-genomic transmission of parental behavior and stress responsivity," Progress in Brain Research 133: 287–302 (2001).
P.O. McGowan et al, "Epigenetic regulation of the glucocorticoid receptor in human brain associates with childhood abuse," Natural Neuroscience 12(3): 342–348 (2009).
I.C. Weaver, "Shaping adult phenotypes through early life environ-ments," Birth Defects Research Part C: Embryo Today 87(4): 314–326 (2009).
J. Goldberg et al, "A twin study of the effects of the Vietnam War on posttraumatic stress disorder," Journal of the American Medical Association 263(9): 1227–1232 (1990).
Michael Sargent, "Epigenetics: different under the skin," Nature 487: 298–299 (19 July 2012).
Z.A. Kaminsky et al, "Epigenetics of personality traits: an illustrative study of identical twins discordant for risk-taking behavior," Twin Research and Human Genetics 11(1): 1–11 (2009).
R.P. Hannes et al, "Effects of rank-order fights on whole-body and blood concentrations of androgens and corticosteroids in the mail swordtail (Xiphophorus helleri)," Z Tierpsychol 65: 53–65 (1984).
A. Booth et al, "Testosterone, and winning and losing in human competition," Hormones and Behavior 23(4): 556–571 (1989).
F. Suay et al, "Effects of competition and its outcome on serum testosterone, cortisol and prolactin," Psychoneuroendocrinology 24 (5): 551–566 (1999).
S.S. Burmeister, "Social dominance regulates androgen and estrogen receptor gene expression," Hormones and Behavior 51(1): 164–170 (2007).
E. Hatchwell & J.M. Greally, "The potential role of epigenomic dysregulation in complex human disease," Trends in Genetics 23(11): 588–595 (2007).
Andy Coghlan, "Stress can affect future generations' genes," New Scientist (25 January 2013).
"Acquired traits can be inherited via small RNAs," (5 December 2012).
Oded Rechavi et al, "Transgenerational inheritance of an acquired small RNA-based antiviral response in C. elegans," Cell 147(6): 1248–1256 (23 November 2011).
Shirley S. Wang, "The genetic ripple effect of hardship," The Wall Street Journal (28 February 2012).
Joost O. Linschooten et al, "Paternal lifestyle as a potential source of germline mutations transmitted to offspring," The FASEB Journal (28 March 2013).
"Epigenetics: mother's nutrition – before pregnancy – may alter function of her children's genes," ScienceDaily (20 September 2012).
Henri S. Tapp et al, "Nutritional factors and gender influence age-related DNA methylation in the human rectal mucosa," Aging Cell (6 December 2012).
Nadine Provençal et al, "Childhood chronic physical aggression associates with adult cytokine levels in plasma," PLoS One 8(7): e69481 (July 2013).
Farooq Ahmed, "Epigenetics: tales of adversity," Nature 468: S20 (23 December 2010).
K.A. Lillycrop et al, "Induction of altered epigenetic regulation of the hepatic glucocorticoid receptor in the offspring of rats fed a protein-restrict diet during pregnancy suggest that reduced DNA methyl-transferase-1 expression is involved in impaired DNA methylation and changes in histone modifications," British Journal of Nutrition 97(6): 1064–1073 (2007).
Janet Raloff, "Pollutants long gone, but disease carries on," Science News (28 February 2012).
"Grandma's curse," The Economist (3 November 2012).
Mohan Manikkam et al, "Transgenerational actions of environmental compounds on reproductive disease and identification of epigenetic biomarkers of ancestral exposures," PLoS One (28 February 2012).
Olivia Corradin et al, "Combinatorial effects of multiple enhancer variants in linkage disequilibrium dictate levels of gene expression to confer susceptibility to common traits," Genome Research (6 November 2013).
"Common disorders: it's not the genes themselves, but how they are controlled," ScienceDaily (20 December 2013).
Leo Loeb, "book review of Cancer, Its Cause and Treatment", Science (14 January 1916).
Kiran Mahajan et al, "H2B Tyr37 phosphorylation suppresses expression of replication-dependent core histone genes," Nature Structural & Molecular Biology (12 August 2012).
A.P. Feinberg et al, "The epigenetic progenitor origin of human cancer," Nature Reviews Genetics 7(1): 21–33 (2006).
Comparative Epigenetics
E. Jablonka & M.J. Raz, "Transgenerational epigenetic inheritance: prevalence, mechanisms, and implications for the study of heredity and evolution," The Quarterly Review of Biology 84(2): 131–176 (2009).
Rachel Ehrenberg, "Eight-legged evolution exploits editing," Science News (6 January 2012).
"Octopus' blue blood allows them to rule the waves," ScienceDaily (5 July 2013).
Plant Epigenetics
E.J. Richards, "Inherited epigenetic variation – revisiting soft inheritance," Nature Reviews Genetics 7(5): 395–401 (2006).
Elizabeth Pennisi, "Evolution heresy? epigenetics underlies heritable plant traits," Science 341: 1055 (6 September 2013).
Joseph P. Calarco et al, "Reprogramming of DNA methylation in pollen guides epigenetic inheritance via small RNA," Cell 154(1): 194–205 (28 September 2012).
Ayaz Ahmad et al, "Decoding the epigenetic language of plant development," Molecular Plant 3(4): 719–728 (July 2010).
"New insights into 'plant memories," ScienceDaily (21 September 2016).
"Emily J. Hawkes et al, "COOLAIR antisense RNAs form evolution-arily conserved elaborate secondary structures," Cell Reports 16: 3087–3096 (20 September 2016).
Marianne T. Hopkins et al, "De novo genetic variation revealed in somatic sectors of single Arabidopsis plants," F1000Research 2:5 (10 January 2013).
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Genomic Production
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Endogenous Retroviruses
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The Genetics of Behavior
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Mice Digs
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Ewen Callaway, "Behaviour genes unearthed," Nature (16 January 2013).
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Gene Editing
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